CH05d11, CH05d11 (genetic_marker) Malus x domestica

Marker Overview
NameCH05d11
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH05d11.primer 1: CACAACCTGATATCCGGGAC
Primer 2CH05d11.primer 2: GAGAAGGTCGTACATTCCTCAA
Product Length171-211
PolymorphismP_ CH05d11
Publication[view all]
ContactC. Gessler
Miyuki Kunihisa
Zhen Han
Publications
YearPublication
2009Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2014Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
2015Cui MS, Yang LL, Han YY, Zhang Q, Zhao YB, Li CM, Han YP, Wang Y, Chen DM, Yang FQ, Zhang XZ, Han ZH. Genetic mapping reveals sophisticated responses of Malus domestica to Botryosphaeria dothidea isolates. Journal of Phytopathology. 2015; 163:42–53.
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
primer 1CH05d11.primer 1Malus x domesticaprimer
primer 2CH05d11.primer 2Malus x domesticaprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
sorbitol contentqSOR.OA-ch12-OrinMalus x domesticaQTL
phenolic compound contentqPHE.X5210X8402-LG12.F09.procyanidinB1Malus x domesticaQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CH05d11CH05d11Malus x domesticamarker_locus
CH05d11CH05d11-13Malus x domesticamarker_locus
CH05d11CH05d11-60.7Malus x domesticamarker_locus
CH05d11CH05d11-60.74Malus x domesticamarker_locus
CH05d11CH05d11-62.313Malus x domesticamarker_locus
CH05d11CH05d11-109.07Malus x domesticamarker_locus


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-C16xC17-F1-201212N/A20.51CH05d11View
2Apple Integrated map12N/A17.6CH05d11View
3Apple-FD-F1-2006F12N/A30.7CH05d11View
4Apple-FD-F1-2006D12N/A34CH05d11View
5Apple-MM-F112N/A15.2CH05d11View
6Apple-OA-F1-OrinOR12N/A23.6CH05d11View
7Apple-JGD-F1-FRRJ12N/A0CH05d11View
8Apple-GDxJ-F1-2012LG12N/A37.3CH05d11View
9Apple-M432-2012LG12N/A15.4CH05d11View
10Apple-JGD-F1-2014J12N/A18CH05d11View
11Apple-JGD-F1-2014G12N/A29.4CH05d11View
12Apple-X5210X8402-F1-ConsensusLG12N/A23.2CH05d11View
13Apple-X5210X8402-F1-X5210LG12N/A29.7CH05d11View
14Apple-X5210X8402-F1-X8402LG12N/A14.7CH05d11View
15Apple-JG-F1LG12N/A39.4CH05d11View
16Apple-JGxWSH-F1LG12N/A26.6CH05d11View
17Apple-WSH-F1LG12N/A25.1CH05d11View
18Pear-Bartlett-F1-2007Ba12N/A13.7CH05d11View
19Pear-La_France-F1-2007La12N/A19CH05d11View
20Apple-FD-Discovery-F1-2003D12N/A28.8CH05d11View
21Pear-Ba-F1-2013Ba12N/A13CH05d11View
22Pear-BD-F1-2015LG12N/A60.7CH05d11View
23Pear-Bayuehong-F1-2015LG12N/A60.74CH05d11View
24Pear-Dangshansuli-F1-2015LG12N/A62.31CH05d11View
25Pear-integrated_consensus_map-IPCG-2017LG12N/A109.07CH05d11View
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Miyuki Kunihisa
First name:Miyuki
Last name:Kunihisa
Institution:NARO Institute of Fruit Tree Science
Address:2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:Japan
Email:miyuky@affrc.go.jp
Phone:81-29-838-6437
Keywords:fruit drop
Zhen Han
First name:Zhen
Last name:Han
Institution:Institute for Horticultural Plants, China Agricultural University
Address:Beijing 100193, China
Country:China
Email:rschan@cau.edu.cn
Keywords:apple