CH05e06, CH05e06 (genetic_marker) Malus x domestica

Marker Overview
NameCH05e06
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH05e06.primer 1: ACACGCACAGAGACAGAGACAT
Primer 2CH05e06.primer 2: GTTGAATAGCATCCCAAATGGT
Product Length125-222
PolymorphismP_ CH05e06
Publication[view all]
ContactC. Gessler
Andreas Peil
Miyuki Kunihisa
Publications
YearPublication
2004Yamamoto T, Kimura T, Saito T, Kotobuki K, Matsuta N, Liebhard R, Gessler C, Weg W.E. van de, Hayashi, T. Genetic linkage maps of Japanese and European pears aligned to the apple consensus map. Acta Horticulturae. 2004; 663:51-56.
2009Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2014Wöhner TW, Flachowsky H, Richter K, Garcia-Libreros T, Trognitz F, Hanke M, Peil A. QTL mapping of fire blight resistance in Malus ×robusta 5 after inoculation with different strains of Erwinia amylovora. Molecular breeding. 2014; 34(1):217-230.
2012Schouten HJ, van de Weg WE, Carling J, Khan SI, McKay SJ, van Kaauwen MPW, Wittenberg AHJ, Koehorst-van Putten HJJ, Noordijk Y, Gao Z, Rees DJG, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A. Diversity arrays technology (DArT) markers in apple for genetic linkage maps. Molecular breeding 2012 29:645–660
2014Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
2015Ben Sadok I, Tiecher A, Galvez-Lopez D, Lahaye M, Lasserre-Zuber P, Bruneau M, Hanteville S, Robic R, Cournol R, Laurens F. Apple fruit texture QTLs: year and cold storage effects on sensory and instrumental traits. Tree Genetics & Genomes 2015 11:119
2004Plant Breeding, 123(4):321
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Andreas Peil
First name:Andreas
Last name:Peil
Title:Researcher
Institution:Institute for Breeding Research on Fruit
Address:Kulius Kuhn-Institut (JKI), Pillnitzer Platz 3a, 01326
Country:Dresden, Germany
Email:andreas.peil@jki.bund.de
Miyuki Kunihisa
First name:Miyuki
Last name:Kunihisa
Institution:NARO Institute of Fruit Tree Science
Address:2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:Japan
Email:miyuky@affrc.go.jp
Phone:81-29-838-6437
Keywords:fruit drop
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
primer 1CH05e06.primer 1Malus x domesticaprimer
primer 2CH05e06.primer 2Malus x domesticaprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
preharvest fruit dropqPFD.OA-ch5-AkaneMalus x domesticaQTL


This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
resistance to Erwinia amylovoraqREA.IM-Mr5-ch5Malus robustaQTL
resistance to Erwinia amylovoraqREA.IM-Mr5-ch5.2Malus robustaQTL
resistance to Erwinia amylovoraqREA.IM-Mr5-ch5.1Malus robustaQTL
fruit textureqFT.XX-ch5.1-S0Malus x domesticaQTL
fruit textureqFT.XX-ch5.3Malus x domesticaQTL
fruit meltinessqFRMT.XX-ch5.1Malus x domesticaQTL
fruit textureqFT.XX-ch5.1-S0.3Malus x domesticaQTL
fruit textureqFT.XX-ch5.1-S2.1Malus x domesticaQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CH05e06CH05e06Malus x domesticamarker_locus
CH05e06CH05e06-28.07Malus x domesticamarker_locus
CH05e06CH05e06-45.4Malus x domesticamarker_locus
CH05e06CH05e06-36.1Malus x domesticamarker_locus
CH05e06CH05e06-8.4Malus x domesticamarker_locus
CH05e06CH05e06-18.74Malus x domesticamarker_locus


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-C16xC17-F1-20125N/A33.2CH05e06View
2Pear-BH-F1Ba5N/A55.4CH05e06View
3Apple-FD-F1-2006F5N/A22CH05e06View
4Apple-FD-F1-2006D5N/A44.9CH05e06View
5Apple Integrated map5N/A32CH05e06View
6Apple-IM-F1-IdaredIda LG 5N/A22.3CH05e06View
7Apple-IM-F1-Mr5Mr5 LG 5N/A25.2CH05e06View
8Apple-2000-2012-F1ch5N/A33CH05e06View
9Apple-OA-F1-OrinOR5N/A6.1CH05e06View
10Apple-OA-F1-AkaneAK5N/A20.1CH05e06View
11Apple-X3259X3263-F15N/A23.67CH05e06View
12Apple-RGTxGD-F1-2015RGT_5N/A16.89CH05e06View
13Apple-RGTxGD-F1-2015GD_5N/A31.51CH05e06View
14Apple-RGxPI6-F1LG5N/A28.7CH05e06View
15Apple-X5210X8402-F1-ConsensusLG5N/A27.1CH05e06View
16Apple-X5210X8402-F1-X8402LG5N/A41CH05e06View
17Apple-FjxPL-F1-2013LG5N/A0CH05e06View
18Pear-Bartlett-F1-2007Ba5N/A8.8CH05e06View
19Pear-La_France-F1-2007La5N/A16.7CH05e06View
20Apple-FD-Discovery-F1-2003D5N/A44CH05e06View
21Apple-Coop17xCoop16-F1-2014LG05N/A28.07CH05e06View
22Apple-JM7xS63-F1J5N/A45.4CH05e06View
23Apple-JM7xS63-F1S5N/A36.1CH05e06View
24Pear-Ba-F1-2013Ba5N/A8.4CH05e06View
25Pear-integrated_consensus_map-IPCG-2017LG5N/A18.74CH05e06View