CH05h05, CH05h05 (genetic_marker) Malus x domestica

Marker Overview
NameCH05h05
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH05h05.primer 1: ACATGTCACTCCTACGCGG
Primer 2CH05h05.primer 2: GTGCAGTGATTAGCATTGCTGT
Product Length168-184
PolymorphismP_ CH05h05
Publication[view all]
ContactC. Gessler
Publications
YearPublication
2009Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2014Emeriewen O, Richter K, Kilian A, Zini E, Hanke M, Malnoy M, Peil A. Identification of a major quantitative trait locus for resistance to fire blight in the wild apple species Malus fusca. Molecular breeding. 2014; 34(2):407-419.
2012Schouten HJ, van de Weg WE, Carling J, Khan SI, McKay SJ, van Kaauwen MPW, Wittenberg AHJ, Koehorst-van Putten HJJ, Noordijk Y, Gao Z, Rees DJG, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A. Diversity arrays technology (DArT) markers in apple for genetic linkage maps. Molecular breeding 2012 29:645–660
2015Ben Sadok I, Tiecher A, Galvez-Lopez D, Lahaye M, Lasserre-Zuber P, Bruneau M, Hanteville S, Robic R, Cournol R, Laurens F. Apple fruit texture QTLs: year and cold storage effects on sensory and instrumental traits. Tree Genetics & Genomes 2015 11:119
2004Plant Breeding, 123(4):321
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
primer 1CH05h05.primer 1Malus x domesticaprimer
primer 2CH05h05.primer 2Malus x domesticaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CH05h05CH05h05Malus x domesticamarker_locus
CH05h05CH05h05-6Malus x domesticamarker_locus
CH05h05CH05h05-4.9Malus x domesticamarker_locus
CH05h05CH05h05-71.9Malus x domesticamarker_locus
CH05h05CH05h05-17.377Malus x domesticamarker_locus
CH05h05CH05h05-71.441Malus x domesticamarker_locus
CH05h05CH05h05-16.53Malus x domesticamarker_locus
CH05h05CH05h05-14.76Malus x domesticamarker_locus


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-C16xC17-F1-201213N/A60.24CH05h05View
2Apple Integrated map13N/A8.4CH05h05View
3Apple-FD-F1-2006D13N/A3.4CH05h05View
4Apple-MAL0045_x_Idared-F1-MfuscaLG13AN/A5.2CH05h05View
5Apple-PF-F1-2012ch13N/A2CH05h05View
6Apple-X3259X3263-F113N/A8.42CH05h05View
7Apple-RGTxGD-F1-2015RGT_13N/A6.96CH05h05View
8Apple-RGTxGD-F1-2015GD_13N/A7.99CH05h05View
9Apple-JM7xS63-F1J13N/A6CH05h05View
10Apple-JM7xS63-F1J13N/A6CH05h05View
11Pear-Ba-F1-2013Ba13N/A4.9CH05h05View
12Pear-BD-F1-2015LG13N/A71.9CH05h05View
13Pear-Bayuehong-F1-2015LG13N/A17.38CH05h05View
14Pear-Dangshansuli-F1-2015LG13N/A71.44CH05h05View
15Pear-integrated_consensus_map-IPCG-2017LG13N/A16.53CH05h05View
16Pear-integrated_consensus_map-IPCG-2017LG16N/A14.76CH05h05View