GDsnp00307, GDsnp00307 (genetic_marker) Malus x domestica

Marker Overview
NameGDsnp00307
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Cindy F. Verdu
CommentJust need to add in aliases, also was not in sheet provided, only probe 1 in GDR
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Cindy F. Verdu
First name:Cindy
Last name:Verdu
Title:Researcher
Institution:INRA
Address:INRA, UMR1345 Institut de Recherche en Horticulture et Semences, Beaucouze, France
Country:France
Email:cindyverdu@gmail.com
Publications
YearPublication
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2017Norelli J, Wisniewski M, Fazio G, Burchard E, Gutierrez B, Levin E, Droby S.. Genotyping-by-sequencing markers facilitate the identification of quantitative trait loci controlling resistance to Penicillium expansum in Malus sieversii. PLoS ONE. 2017; 12(3):e0172949.
2011Micheletti D, Troggio M, Zharkikh A, Costa F, Malnoy M, Velasco R, Salvi S. Genetic diversity of the genus Malus and implications for linkage mapping with SNPs. Tree Genetics & Genomes. 2011; 7(4):857-868.
2014Verdu CF, Guyot S, Childebrand N, Bahut M, Celton J-M, Gaillard S, Lasserre-Zuber P, Troggio M, Guilet D, Laurens F. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS ONE. 2014; 9(10):e107103.
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-C16xC17-F1-201210N/A31.22GDsnp00307View
2Apple Integrated map10N/A61.9GDsnp00307View
3Apple-B-F1-2014B10N/A77.4GDsnp00307View
4Apple-FjxPL-F1-2013LG10N/A74.53GDsnp00307View
5Apple-RGxPI6-F1LG10N/A73.6GDsnp00307aView
6Apple-GB-F1LG_10N/A60.3GD_SNP00307View
7Apple-X5210X8402-F1-X8402LG10N/A65.2GD_SNP00307View
8Apple-GDxBr-F1-2013LG10N/A60.41GD_SNP00307View
Sequence
>GDsnp00307 ID=GDsnp00307; Name=GDsnp00307; organism=Malus x domestica; type=genetic_marker; length=201bp
GGCAATTGATTTTCTAACAAGAGACGGTTATTTGGTTGTATTGGTCAGAA
GATTGTGAAATTAAGGGTCAGATTTCAACATGTCTGTTTGCATTATGATT
KAACTGAATGTGATTTGTACTGTCCATTTTCTTCAAGTGTTGCACTTTTG
TGATTGTAAAAGCTTATATGTTGGCATACTGTATGGTTTTGCGGAGGTGT
G