CH01g05, CH01g05 (genetic_marker) Malus x domestica

Marker Overview
NameCH01g05
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH01g05.primer 1: CATCAGTCTCTTGCACTGGAAA
Primer 2CH01g05.primer 2: GACAGAGTAAGCTAGGGCTAGGG
Product Length140-188
140–188
Max Length151 bp
PolymorphismP_ CH01g05
Publication[view all]
ContactC. Gessler
Miyuki Kunihisa
Zhen Han
Publications
YearPublication
2004Yamamoto T, Kimura T, Saito T, Kotobuki K, Matsuta N, Liebhard R, Gessler C, Weg W.E. van de, Hayashi, T. Genetic linkage maps of Japanese and European pears aligned to the apple consensus map. Acta Horticulturae. 2004; 663:51-56.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2013Lê Van A, Caffier V, Lasserre-Zuber P, Chauveau A, Brunel D, Le Cam B, Durel CE. Differential selection pressures exerted by host resistance quantitative trait loci on a pathogen population: a case study in an apple × Venturia inaequalis pathosystem. The New phytologist. 2013 Feb; 197(3):899-908.
2012Schouten HJ, van de Weg WE, Carling J, Khan SI, McKay SJ, van Kaauwen MPW, Wittenberg AHJ, Koehorst-van Putten HJJ, Noordijk Y, Gao Z, Rees DJG, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A. Diversity arrays technology (DArT) markers in apple for genetic linkage maps. Molecular breeding 2012 29:645–660
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2014Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
2015Cui MS, Yang LL, Han YY, Zhang Q, Zhao YB, Li CM, Han YP, Wang Y, Chen DM, Yang FQ, Zhang XZ, Han ZH. Genetic mapping reveals sophisticated responses of Malus domestica to Botryosphaeria dothidea isolates. Journal of Phytopathology. 2015; 163:42–53.
2015Ben Sadok I, Tiecher A, Galvez-Lopez D, Lahaye M, Lasserre-Zuber P, Bruneau M, Hanteville S, Robic R, Cournol R, Laurens F. Apple fruit texture QTLs: year and cold storage effects on sensory and instrumental traits. Tree Genetics & Genomes 2015 11:119
2004Plant Breeding, 123(4):321
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
primer 1CH01g05.primer 1Malus x domesticaprimer
primer 2CH01g05.primer 2Malus x domesticaprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
epicatechin contentqECAT.X5210X8402-LG14.J09Malus x domesticaQTL
phenolic compound contentqPHE.X5210X8402-LG14.F08.reynoutrinMalus x domesticaQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CH01g05CH01g05Malus x domesticamarker_locus
CH01G05_TCH01G05_TMalus x domesticamarker_locus
CH01g05CH01g05-78.989Malus x domesticamarker_locus
CH01g05CH01g05-109.026Malus x domesticamarker_locus
CH01g05CH01g05-95.999Malus x domesticamarker_locus
CH01g05CH01g05-16.8Malus x domesticamarker_locus
CH01g05CH01g05-8.4Malus x domesticamarker_locus
CH01g05CH01g05-32Malus x domesticamarker_locus
CH01g05CH01g05-61.6Malus x domesticamarker_locus
CH01g05CH01g05-63.137Malus x domesticamarker_locus
CH01g05CH01g05-89.19Malus x domesticamarker_locus


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map14N/A23CH01g05View
2Apple-FD-F1-2006F14N/A20CH01g05View
3Apple-FD-F1-2006D14aN/A10.4CH01g05View
4Pear-BH-F1Ba14N/A32.5CH01g05View
5Pear-BH-F1Ho14N/A36.7CH01g05View
6Pear-PM-F1-Moonglow14N/A19.32CH01g05View
7Apple-PF-F1-2012ch14N/A25CH01g05View
8Apple-MM-F114N/A23.2CH01g05View
9Apple-OA-F1-AkaneAK14N/A3.7CH01g05View
10Apple-JGD-F1-BotcankerG14N/A27.5CH01g05View
11Apple-X3259X3263-F114N/A32.51CH01g05View
12Apple-GDxJ-F1-2012LG14N/A66.5CH01g05View
13Apple-M432-2012LG14N/A0CH01g05View
14Apple-JGD-F1-2014G14N/A64.9CH01g05View
15Apple-RGxPI6-F1LG14N/A34.6CH01g05View
16Apple-X5210X8402-F1-ConsensusLG14N/A30.7CH01g05View
17Apple-X5210X8402-F1-X5210LG14N/A38.8CH01g05View
18Apple-X5210X8402-F1-X8402LG14N/A28.3CH01g05View
19Apple-FjxPL-F1-2013LG14N/A32.39CH01g05View
20Pear-Bartlett-F1-2007Ba14N/A32.3CH01g05View
21Pear-La_France-F1-2007La14N/A31.2CH01g05View
22Apple-FD-Discovery-F1-2003D14N/A11.4CH01g05View
23Apple-DT-F1-2013LG14N/A21CH01G05_TView
24Pear-Rcf-F1-femaleLG14N/A78.99CH01g05View
25Pear-M-F1-maleLG14N/A109.03CH01g05View
26Pear-RM-F1-IntegratedLG14N/A96CH01g05View
27Apple-JM7xS63-F1J14N/A16.8CH01g05View
28Apple-JM7xS63-F1S14N/A8.4CH01g05View
29Pear-Ba-F1-2013Ba14N/A32CH01g05View
30Pear-BD-F1-2015LG14N/A61.6CH01g05View
31Pear-Bayuehong-F1-2015LG14N/A63.14CH01g05View
32Pear-integrated_consensus_map-IPCG-2017LG14N/A89.19CH01g05View
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Miyuki Kunihisa
First name:Miyuki
Last name:Kunihisa
Institution:NARO Institute of Fruit Tree Science
Address:2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:Japan
Email:miyuky@affrc.go.jp
Phone:81-29-838-6437
Keywords:fruit drop
Zhen Han
First name:Zhen
Last name:Han
Institution:Institute for Horticultural Plants, China Agricultural University
Address:Beijing 100193, China
Country:China
Email:rschan@cau.edu.cn
Keywords:apple