CH02d08, CH02d08 (genetic_marker) Malus x domestica

Marker Overview
NameCH02d08
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH02d08.primer 1: TCCAAAATGGCGTACCTCTC
Primer 2CH02d08.primer 2: GCAGACACTCACTCACTATCTCTC
Product Length210-254
210–254
Max Length223 bp
PolymorphismP_ CH02d08
Publication[view all]
ContactC. Gessler
Andreas Peil
Miyuki Kunihisa
Publications
YearPublication
2004Yamamoto T, Kimura T, Saito T, Kotobuki K, Matsuta N, Liebhard R, Gessler C, Weg W.E. van de, Hayashi, T. Genetic linkage maps of Japanese and European pears aligned to the apple consensus map. Acta Horticulturae. 2004; 663:51-56.
2009Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2014Wöhner TW, Flachowsky H, Richter K, Garcia-Libreros T, Trognitz F, Hanke M, Peil A. QTL mapping of fire blight resistance in Malus ×robusta 5 after inoculation with different strains of Erwinia amylovora. Molecular breeding. 2014; 34(1):217-230.
2012Schouten HJ, van de Weg WE, Carling J, Khan SI, McKay SJ, van Kaauwen MPW, Wittenberg AHJ, Koehorst-van Putten HJJ, Noordijk Y, Gao Z, Rees DJG, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A. Diversity arrays technology (DArT) markers in apple for genetic linkage maps. Molecular breeding 2012 29:645–660
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2014Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
2015Ben Sadok I, Tiecher A, Galvez-Lopez D, Lahaye M, Lasserre-Zuber P, Bruneau M, Hanteville S, Robic R, Cournol R, Laurens F. Apple fruit texture QTLs: year and cold storage effects on sensory and instrumental traits. Tree Genetics & Genomes 2015 11:119
2004Plant Breeding, 123(4):321
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Andreas Peil
First name:Andreas
Last name:Peil
Title:Researcher
Institution:Institute for Breeding Research on Fruit
Address:Kulius Kuhn-Institut (JKI), Pillnitzer Platz 3a, 01326
Country:Dresden, Germany
Email:andreas.peil@jki.bund.de
Miyuki Kunihisa
First name:Miyuki
Last name:Kunihisa
Institution:NARO Institute of Fruit Tree Science
Address:2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:Japan
Email:miyuky@affrc.go.jp
Phone:81-29-838-6437
Keywords:fruit drop
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
primer 1CH02d08.primer 1Malus x domesticaprimer
primer 2CH02d08.primer 2Malus x domesticaprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fruit sizeqFRSZ.JGD-G11.2008.3Malus x domesticaQTL
fruit shapeqFRSH.JGD-J11.2008.3Malus x domesticaQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CH02d08CH02d08Malus x domesticamarker_locus
CH02d08CH02d08-19.1Malus x domesticamarker_locus
CH02d08CH02d08-9.8Malus x domesticamarker_locus
CH02d08CH02d08-1.6Malus x domesticamarker_locus
CH02d08CH02d08-121.76Malus x domesticamarker_locus


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-FD-F1-2006D11N/A30.9CH02d08View
2Apple-FD-F1-2006F11N/A16.1CH02d08View
3Pear-BH-F1Ba3N/A4.6CH02d08View
4Pear-BH-F1Ho3-1N/A17.4CH02d08View
5Apple Integrated map11N/A23.4CH02d08View
6Apple-IM-F1-IdaredIda LG 11N/A0CH02d08View
7Apple-IM-F1-Mr5Mr5 LG 11N/A17.9CH02d08View
8Pear-PM-F1-PEAR33N/A8.6CH02d08View
9Pear-PM-F1-Moonglow3N/A11.13CH02d08View
10Apple-2000-2012-F1ch11N/A14CH02d08View
11Apple-MM-F111N/A27.3CH02d08View
12Apple-OA-F1-OrinOR11N/A22CH02d08View
13Apple-OA-F1-AkaneAK11N/A20.1CH02d08View
14Apple-X3259X3263-F111N/A32.27CH02d08View
15Apple-GDxJ-F1-2012LG11N/A67.3CH02d08View
16Apple-M432-2012LG11N/A30.6CH02d08View
17Apple-JGD-F1-2014J11N/A5.8CH02d08View
18Apple-JGD-F1-2014G11N/A0CH02d08View
19Apple-RGTxGD-F1-2015RGT_11N/A18.59CH02d08View
20Apple-RGTxGD-F1-2015GD_11N/A28.14CH02d08View
21Apple-RGxPI6-F1LG11N/A28.5CH02d08View
22Apple-M27xM116-2016LG11N/A28CH02d08View
23Apple-X5210X8402-F1-X5210LG11N/A32.6CH02d08View
24Pear-Bartlett-F1-2007Ba3N/A4CH02d08View
25Pear-La_France-F1-2007La3N/A13.4CH02d08View
26Apple-JM7xS63-F1J11N/A19.1CH02d08View
27Apple-JM7xS63-F1S11N/A9.8CH02d08View
28Pear-Ba-F1-2013Ba3N/A1.6CH02d08View
29Pear-integrated_consensus_map-IPCG-2017LG3N/A121.76CH02d08View