CH03d08, CH03d08 (genetic_marker) Malus x domestica

Marker Overview
NameCH03d08
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH03d08.primer 1: CATCAGTCTCTTGCACTGGAAA
Primer 2CH03d08.primer 2: TAGGGCTAGGGAGAGATGATGA
Product Length129-161
PolymorphismP_ CH03d08
Publication[view all]
ContactC. Gessler
Miyuki Kunihisa
Zhen Han
Publications
YearPublication
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2014Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
2015Cui MS, Yang LL, Han YY, Zhang Q, Zhao YB, Li CM, Han YP, Wang Y, Chen DM, Yang FQ, Zhang XZ, Han ZH. Genetic mapping reveals sophisticated responses of Malus domestica to Botryosphaeria dothidea isolates. Journal of Phytopathology. 2015; 163:42–53.
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
primer 1CH03d08.primer 1Malus x domesticaprimer
primer 2CH03d08.primer 2Malus x domesticaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CH03d08CH03d08Malus x domesticamarker_locus
CH03d08CH03d08-75.777Malus x domesticamarker_locus
CH03d08CH03d08-108.398Malus x domesticamarker_locus
CH03d08CH03d08-94.079Malus x domesticamarker_locus
CH03d08CH03d08-32Malus x domesticamarker_locus
CH03d08CH03d08-64.2Malus x domesticamarker_locus
CH03d08CH03d08-66.081Malus x domesticamarker_locus
CH03d08CH03d08-64.956Malus x domesticamarker_locus
CH03d08CH03d08-91.79Malus x domesticamarker_locus


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map14N/A23CH03d08View
2Apple-FD-F1-2006F14N/A20CH03d08View
3Apple-FD-F1-2006D14aN/A10.4CH03d08View
4Apple-MM-F114N/A23.1CH03d08View
5Apple-OA-F1-AkaneAK14N/A3.7CH03d08View
6Apple-JGD-F1-FRRG14N/A29CH03d08View
7Apple-GDxJ-F1-2012LG14N/A66.2CH03d08View
8Apple-M432-2012LG14N/A0CH03d08View
9Apple-JGD-F1-2014G14N/A64.6CH03d08View
10Apple-RGxPI6-F1LG14N/A33.7CH03d08View
11Apple-JG-F1LG14N/A31.8CH03d08View
12Apple-JGxWSH-F1LG14N/A48.3CH03d08View
13Pear-Bartlett-F1-2007Ba14N/A32.3CH03d08View
14Pear-La_France-F1-2007La14N/A32.2CH03d08View
15Apple-FD-Discovery-F1-2003D14N/A11.4CH03d08View
16Pear-Rcf-F1-femaleLG14N/A75.78CH03d08View
17Pear-M-F1-maleLG14N/A108.4CH03d08View
18Pear-RM-F1-IntegratedLG14N/A94.08CH03d08View
19Pear-Ba-F1-2013Ba14N/A32CH03d08View
20Pear-BD-F1-2015LG14N/A64.2CH03d08View
21Pear-Bayuehong-F1-2015LG14N/A66.08CH03d08View
22Pear-Dangshansuli-F1-2015LG14N/A64.96CH03d08View
23Pear-integrated_consensus_map-IPCG-2017LG14N/A91.79CH03d08View
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Miyuki Kunihisa
First name:Miyuki
Last name:Kunihisa
Institution:NARO Institute of Fruit Tree Science
Address:2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:Japan
Email:miyuky@affrc.go.jp
Phone:81-29-838-6437
Keywords:fruit drop
Zhen Han
First name:Zhen
Last name:Han
Institution:Institute for Horticultural Plants, China Agricultural University
Address:Beijing 100193, China
Country:China
Email:rschan@cau.edu.cn
Keywords:apple