CH04g04, CH04g04 (genetic_marker) Malus x domestica

Marker Overview
NameCH04g04
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH04g04.primer 1: AGTGGCTGATGAGGATGAGG
Primer 2CH04g04.primer 2: GCTAGTTGCACCAAGTTCACA
Product Length170-186
PolymorphismP_ CH04g04
Publication[view all]
ContactC. Gessler
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Publications
YearPublication
2009Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2014Emeriewen O, Richter K, Kilian A, Zini E, Hanke M, Malnoy M, Peil A. Identification of a major quantitative trait locus for resistance to fire blight in the wild apple species Malus fusca. Molecular breeding. 2014; 34(2):407-419.
2012Schouten HJ, van de Weg WE, Carling J, Khan SI, McKay SJ, van Kaauwen MPW, Wittenberg AHJ, Koehorst-van Putten HJJ, Noordijk Y, Gao Z, Rees DJG, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A. Diversity arrays technology (DArT) markers in apple for genetic linkage maps. Molecular breeding 2012 29:645–660
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-FD-F1-2006D12N/A29.3CH04g04View
2Apple-FD-F1-2006F12N/A30.2CH04g04View
3Apple Integrated map12N/A15.1CH04g04View
4Apple-MAL0045_x_Idared-F1-MfuscaLG12N/A0CH04g04View
5Apple-PF-F1-2012ch12N/A15CH04g04View
6Apple-MM-F112N/A12.4CH04g04View
7Apple-GDxJ-F1-2012LG12N/A32.9CH04g04View
8Apple-M432-2012LG12N/A12.2CH04g04View
9Apple-JGD-F1-2014J12N/A14.5CH04g04View
10Apple-JGD-F1-2014G12N/A25.2CH04g04View
11Apple-RGTxGD-F1-2015RGT_12N/A15.9CH04g04View
12Apple-RGTxGD-F1-2015GD_12N/A22.83CH04g04View
13Apple-RGxPI6-F1LG12N/A21.5CH04g04View
14Apple-DP-F1-2013D12N/A11.7CH04g04View
15Apple-DP-F1-2013P12N/A18.6CH04g04View
16Apple-FjxPL-F1-2013LG12N/A51.25CH04g04View
17Pear-BD-F1-2014-geneticLG12N/A102.3CH04g04View
18Pear-La_France-F1-2007La12N/A17.1CH04g04View
19Apple-FD-Discovery-F1-2003D12N/A26.5CH04g04View
20Pear-BD-F1-2015LG12N/A65.3CH04g04View
21Pear-Bayuehong-F1-2015LG12N/A65.37CH04g04View
22Pear-Dangshansuli-F1-2015LG12N/A67.1CH04g04View
23Pear-integrated_consensus_map-IPCG-2017LG12N/A92.77CH04g04View
24Pear-M-F1-maleLG12N/A51.51CH04g04View
25Pear-RM-F1-IntegratedLG12N/A51.45CH04g04View
26Apple-JM7xS63-F1J12N/A16.8CH04g04View
27Apple-JM7xS63-F1S12N/A9.4CH04g04View