CH05f04, CH05f04 (genetic_marker) Malus x domestica

Marker Overview
NameCH05f04
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH05f04.primer 1: GATGATGGTGCTCTCGGTTATT
Primer 2CH05f04.primer 2: TTATGTTGGGTAATGTCTTCCG
Product Length160-172
PolymorphismP_ CH05f04
Publication[view all]
ContactC. Gessler
Andreas Peil
Miyuki Kunihisa
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Andreas Peil
First name:Andreas
Last name:Peil
Title:Researcher
Institution:Institute for Breeding Research on Fruit
Address:Kulius Kuhn-Institut (JKI), Pillnitzer Platz 3a, 01326
Country:Dresden, Germany
Email:andreas.peil@jki.bund.de
Miyuki Kunihisa
First name:Miyuki
Last name:Kunihisa
Institution:NARO Institute of Fruit Tree Science
Address:2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:Japan
Email:miyuky@affrc.go.jp
Phone:81-29-838-6437
Keywords:fruit drop
Publications
YearPublication
2004Yamamoto T, Kimura T, Saito T, Kotobuki K, Matsuta N, Liebhard R, Gessler C, Weg W.E. van de, Hayashi, T. Genetic linkage maps of Japanese and European pears aligned to the apple consensus map. Acta Horticulturae. 2004; 663:51-56.
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2014Wöhner TW, Flachowsky H, Richter K, Garcia-Libreros T, Trognitz F, Hanke M, Peil A. QTL mapping of fire blight resistance in Malus ×robusta 5 after inoculation with different strains of Erwinia amylovora. Molecular breeding. 2014; 34(1):217-230.
2012Schouten HJ, van de Weg WE, Carling J, Khan SI, McKay SJ, van Kaauwen MPW, Wittenberg AHJ, Koehorst-van Putten HJJ, Noordijk Y, Gao Z, Rees DJG, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A. Diversity arrays technology (DArT) markers in apple for genetic linkage maps. Molecular breeding 2012 29:645–660
2012Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2014Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-FD-F1-2006D13N/A89.1CH05f04View
2Apple-FD-F1-2006F13N/A19CH05f04View
3Pear-BH-F1Ba13N/A47.1CH05f04View
4Apple-IM-F1-Mr5Mr5 LG 13N/A41.7CH05f04View
5Apple-2000-2012-F1ch13N/A81CH05f04View
6Apple-PF-F1-2012ch13N/A67CH05f04View
7Apple-MM-F113N/A65.8CH05f04View
8Apple-OA-F1-AkaneAK13N/A58.9CH05f04View
9Apple-M432-2012LG13N/A53.5CH05f04View
10Apple-RGTxGD-F1-2015RGT_13N/A66.08CH05f04View
11Pear-Bartlett-F1-2007Ba13N/A52.2CH05f04View
12Pear-La_France-F1-2007La13N/A79.2CH05f04View
13Apple-FD-Discovery-F1-2003D13N/A90CH05f04View
14Pear-BD-F1-2015LG13N/A68.8CH05f04View
15Pear-Bayuehong-F1-2015LG13N/A16.51CH05f04View
16Pear-Dangshansuli-F1-2015LG13N/A68.55CH05f04View
17Pear-integrated_consensus_map-IPCG-2017LG13N/A144.39CH05f04View