NZmsEB117266, NZmsEB117266 (genetic_marker) Malus x domestica | GDR

Marker Overview

Marker Overview


Name	NZmsEB117266
Genbank ID	N/A
Type	SSR
Species	Malus x domestica
Repeat Motif	(CA)11
Primer 1	NZmsEB117266.F: CATCCATGATCATTCAAGACC
Primer 2	NZmsEB117266.R: CGTGGCCCTCTATATTAAAGC
Publication	[view all]
Contact	Andreas Peil S. Gardiner

Contact

Name

Details

Andreas Peil

First name:	Andreas
Last name:	Peil
Title:	Researcher
Institution:	Institute for Breeding Research on Fruit
Address:	Kulius Kuhn-Institut (JKI), Pillnitzer Platz 3a, 01326
Country:	Dresden, Germany
Email:	andreas.peil@jki.bund.de

S. Gardiner

First name:	Sue
Last name:	Gardiner
Institution:	HortResearch, New Zealand
Address:	HortResearch Palmerston North Tennent Drive Private Bag 11 030 Palmerston North, New Zealand
Email:	sgardiner@hortresearch.co.nz
Phone:	64-6-356 8080

Publications


Year	Publication
2014	Wöhner TW, Flachowsky H, Richter K, Garcia-Libreros T, Trognitz F, Hanke M, Peil A. QTL mapping of fire blight resistance in Malus ×robusta 5 after inoculation with different strains of Erwinia amylovora. Molecular breeding. 2014; 34(1):217-230.
2012	Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2009	Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-IM-F1-Idared	Ida LG 15	N/A	57.8	NZmsEB117266	View
2	Apple-IM-F1-Mr5	Mr5 LG 15	N/A	22.7	NZmsEB117266	View
3	Apple-MM-F1	15	N/A	83	NZmsEB117266	View
4	Apple-GDxJ-F1-2012	LG15	N/A	77.6	NZmsEB117266	View
5	Apple-M432-2012	LG15	N/A	85.6	NZmsEB117266	View
6	Apple-JGD-F1-2014	G15	N/A	51.2	NZmsEB117266	View
7	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	132.22	NZmsEB117266	View

Alignments

Feature Name	Type	Location	Analysis
Chr15	chromosome	Chr15:27188425..27188601.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr15A	chromosome	chr15A:26811389..26811565.	Malus x domestica ‘Honeycrisp’ Genome v1.1.a1 Assembly & Annotation