s1_11684599, s1_11684599 (genetic_marker) Prunus avium

Marker Overview
Names1_11684599
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s1_11684599
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCATTAGATCTGAAGAAGCTGCAAACACCTCTATATGAAGAGTTCTTTAGCTCAATGAATG GAGTTGGTCCTCCAGGTGCAATTGGAAATGCAGATTGTGTTCGTGTTTCAAATAATCTGA ATTTACCTCCTAAAAGTAAGTCACCCAGTC
3' Flanking SequenceCGCACCTAGTAGAAGATTCTCTACAGCAGTTGATGCTGCAGTCCCTGGGAAAAATATAAA AAATGTATCAAATACCAGTGGTGTGCACAGTCGAATCTTACATGAAATTCAGCCACCTCA GCATAGTGAATGGAAACAGCTTCCTGATGA
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RaxRi-F1LG1N/A36.44s1_11684599View
2Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 1N/A11684599s1_11684599View
3Sweet Cherry-V-F1-6+9K_array1N/A44.27s1_11684599View
4Sweet Cherry-RosBREED-3.8K-20201N/A43.22s1_11684599View
5Sweet Cherry-VxC-F1-6+9K_array1N/A61.23s1_11684599View
Sequence
>s1_11684599 ID=s1_11684599; Name=s1_11684599; organism=Prunus avium; type=genetic_marker; length=301bp
CATTAGATCTGAAGAAGCTGCAAACACCTCTATATGAAGAGTTCTTTAGC
TCAATGAATGGAGTTGGTCCTCCAGGTGCAATTGGAAATGCAGATTGTGT
TCGTGTTTCAAATAATCTGAATTTACCTCCTAAAAGTAAGTCACCCAGTC
RCGCACCTAGTAGAAGATTCTCTACAGCAGTTGATGCTGCAGTCCCTGGG
AAAAATATAAAAAATGTATCAAATACCAGTGGTGTGCACAGTCGAATCTT
ACATGAAATTCAGCCACCTCAGCATAGTGAATGGAAACAGCTTCCTGATG
A
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:12132833..12132833. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:9964867..9964867. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)