s1_1238680, s1_1238680 (genetic_marker) Prunus avium

Marker Overview
Names1_1238680
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s1_1238680
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCTGCCGGCAAGCTCTTTCGCACATCTCTCGGTCTGGACTCCGGATGCATTGCTCA
3' Flanking SequenceGGCACGGC
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RaxRi-F1LG1N/A8.17s1_1238680View
2Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 1N/A1238680s1_1238680View
3Sweet Cherry-V-F1-6+9K_array1N/A2.56s1_1238680View
4Sweet Cherry-RosBREED-3.8K-20201N/A4.94s1_1238680View
5Sweet Cherry-VxC-F1-6+9K_array1N/A6.74s1_1238680View
Sequence
>s1_1238680 ID=s1_1238680; Name=s1_1238680; organism=Prunus avium; type=genetic_marker; length=64bp
CTGCCGGCAAGCTCTTTCGCACATCTCTCGGTCTGGACTCCGGATGCATT
GCTCAYGGCACGGC
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:1238489..1238489. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:1276855..1276855. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)