s1_12959899, s1_12959899 (genetic_marker) Prunus avium

Marker Overview
Names1_12959899
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s1_12959899
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCTCCATAACTGGCTGTAGGTGATCAACATCAGGCAATCGCCTTTTCTTATTACATGCTGA GAAATCCATAGCTTCGATTTTTCTAGTGAGATGTTCAACAAAAGTAGGGTTCTGAACATT CTTATCTAAGAATTTCAGCAAATCCTTCTG
3' Flanking SequenceCGTTGTTCCATGGAATTCACCCGCTGTGTTAGGTCTTCCAACTGCAGCTTTGCATCAGAT CGCTGCTGCTTGAACCTTGAAATATTTGCCTCTAGTGTGGCTTTATCATGTGAAAGCTTC TCTATTTCGTCATCAAGAGCCGCTCTCTCC
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Patricio Hinrichsen
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
s1_12959899s1_12959899Prunus aviummarker_locus


Sequence
>s1_12959899 ID=s1_12959899|Name=s1_12959899|organism=Prunus avium|type=genetic_marker|length=301bp
CTCCATAACTGGCTGTAGGTGATCAACATCAGGCAATCGCCTTTTCTTAT
TACATGCTGAGAAATCCATAGCTTCGATTTTTCTAGTGAGATGTTCAACA
AAAGTAGGGTTCTGAACATTCTTATCTAAGAATTTCAGCAAATCCTTCTG
YCGTTGTTCCATGGAATTCACCCGCTGTGTTAGGTCTTCCAACTGCAGCT
TTGCATCAGATCGCTGCTGCTTGAACCTTGAAATATTTGCCTCTAGTGTG
GCTTTATCATGTGAAAGCTTCTCTATTTCGTCATCAAGAGCCGCTCTCTC
C
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20201N/A43.97s1_12959899View
2Sweet Cherry-RaxRi-F1LG1N/A45.06s1_12959899View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 1N/A12959899s1_12959899View
Alignments
Feature NameTypeLocationAnalysis
PAV_r1.0chr1 chromosome PAV_r1.0chr1:10712392... Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)
Pp01 chromosome Pp01:13408129... Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding