s1_1761660, s1_1761660 (genetic_marker) Prunus avium

Marker Overview
Names1_1761660
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s1_1761660
TypeSNP
SNP AllelesT/C
5' Flanking SequenceAGGGCAATTGATAGACTGTTAAAAGTTATCAAGGCACCCCATCCAGTTCCTGAAGTTTGC AGGAAAGCTGCTATGATATTGGAAAGTCTTGTGTCTGAGCCACAAAACCGAGCCTTGCTG CTAGCTTATGAGAATGCATTTGCTGAAATA
3' Flanking SequenceTATTCTCAGATGCCAGGTATTCCGATACCTTTGCCAGGATTTTGTACGAACTGACGTCTA GACCAAACAACAAAGTGGCAGCAGCCCGTGGTGTTTGGGGAATGTAACCAAATATTGTAT CCTCCGGTGATTTGCCTCTTTATAAAGTTA
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Patricio Hinrichsen
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
s1_1761660s1_1761660Prunus aviummarker_locus


Sequence
>s1_1761660 ID=s1_1761660|Name=s1_1761660|organism=Prunus avium|type=genetic_marker|length=301bp
AGGGCAATTGATAGACTGTTAAAAGTTATCAAGGCACCCCATCCAGTTCC
TGAAGTTTGCAGGAAAGCTGCTATGATATTGGAAAGTCTTGTGTCTGAGC
CACAAAACCGAGCCTTGCTGCTAGCTTATGAGAATGCATTTGCTGAAATA
YTATTCTCAGATGCCAGGTATTCCGATACCTTTGCCAGGATTTTGTACGA
ACTGACGTCTAGACCAAACAACAAAGTGGCAGCAGCCCGTGGTGTTTGGG
GAATGTAACCAAATATTGTATCCTCCGGTGATTTGCCTCTTTATAAAGTT
A
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20201N/A7.81s1_1761660View
2Sweet Cherry-Ri-F1RiLG1N/A0.1s1_1761660View
3Sweet Cherry-RaxRi-F1LG1N/A10.49s1_1761660View
4Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 1N/A1761660s1_1761660View
Alignments
Feature NameTypeLocationAnalysis
PAV_r1.0chr1 chromosome PAV_r1.0chr1:1860046... Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)
Pp01 chromosome Pp01:1761521... Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding