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Marker Overview
Name | s1_21700484 |
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | CTTCGTACTACCTCATGTCCTTCTCTTGCCTCTTCTATTACCTCTACTCAATTCCTCGCA
TCTCTTCTTTCAAAACCAAGCAAGACCTCAAGTACCACGGCGGTGAGGTCCCTGATGAAA
ACCTCATCCTCACCCCACTGGAGAGCTGCA |
3' Flanking Sequence | CCACACTCTTTATGTCCTCTTCTTCCCTCTCCTCTTCCACATCGCCTCTCACTACTCCAT
TGTATTCTCATCCGCGGCAGCAGTCTCTGATCTATTTCTCCTTTTCTTCATTCCTTTCCT
TTTCCAGCTCTACGCCTCGACCCGGGGCGC |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_21700484 ID=s1_21700484; Name=s1_21700484; organism=Prunus avium; type=genetic_marker; length=301bp CTTCGTACTACCTCATGTCCTTCTCTTGCCTCTTCTATTACCTCTACTCA ATTCCTCGCATCTCTTCTTTCAAAACCAAGCAAGACCTCAAGTACCACGG CGGTGAGGTCCCTGATGAAAACCTCATCCTCACCCCACTGGAGAGCTGCA YCCACACTCTTTATGTCCTCTTCTTCCCTCTCCTCTTCCACATCGCCTCT CACTACTCCATTGTATTCTCATCCGCGGCAGCAGTCTCTGATCTATTTCT CCTTTTCTTCATTCCTTTCCTTTTCCAGCTCTACGCCTCGACCCGGGGCG C
Alignments
Feature Name | Type | Location | Analysis |
Pp01 |
chromosome |
Pp01:22674494..22674494. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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