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Marker Overview
| Name | s1_28834950 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s1_28834950 |
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| Type | SNP |
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| SNP Alleles | T/G |
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| 5' Flanking Sequence | AGCAGTGGCAGTGGCAAGTGGCAGGATCACAGAAGCAATTTCTTCTGAATTGTTGAGAAT
AAAAGCTGAAAATTCTGCAAGGAAGGCAGAGATGGAAGATATCAGGTCCGAATTGCTTGA
CAGAGAGGACATACAGAGGTTTTGGAATGA |
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| 3' Flanking Sequence | AAACTGAATGAAGAGAAAACCCGTGGTCTTGAGGTGGAGAAGGCTTATCTTGCTGCCCTT
AGTGATTTGGAGCAGGAGAAGATTTTACAAGAAAAGAATTTTGCAGAGATTTTGAAGGAG
AAGGCAGCTATGGAATGTCAGAGGCAGTTA |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_28834950 ID=s1_28834950; Name=s1_28834950; organism=Prunus avium; type=genetic_marker; length=301bp
AGCAGTGGCAGTGGCAAGTGGCAGGATCACAGAAGCAATTTCTTCTGAAT
TGTTGAGAATAAAAGCTGAAAATTCTGCAAGGAAGGCAGAGATGGAAGAT
ATCAGGTCCGAATTGCTTGACAGAGAGGACATACAGAGGTTTTGGAATGA
KAAACTGAATGAAGAGAAAACCCGTGGTCTTGAGGTGGAGAAGGCTTATC
TTGCTGCCCTTAGTGATTTGGAGCAGGAGAAGATTTTACAAGAAAAGAAT
TTTGCAGAGATTTTGAAGGAGAAGGCAGCTATGGAATGTCAGAGGCAGTT
A
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp01 |
chromosome |
Pp01:29809026..29809026. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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