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Marker Overview
| Name | s1_30949986 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s1_30949986 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | ATATTTTTCCTTTGAGTTGACTTGAGCTATATATAGCAGCTGTGCAGATCGATCTATACA
TCTATCTTCTTGTTCCTTTTTCTCTTGAATTGAATCAGATAGAAATTCACAATGGCAAAG
GCAATTCCTGAGGTAATTCTGAGCTGCGGT |
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| 3' Flanking Sequence | ACGACATTCTAGCCATTCCAGTGATTGGCATGGGAACTGCATACCCTGCGCCGGATCCAG
AAACAGACAAGGCTGCGGTTCTTGAAGCCATTAAAGCCGGCTACCGCCACTTTGACACCG
CCTTAGTTTACGGGTCGGAGAAATATCTAG |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_30949986 ID=s1_30949986; Name=s1_30949986; organism=Prunus avium; type=genetic_marker; length=301bp
ATATTTTTCCTTTGAGTTGACTTGAGCTATATATAGCAGCTGTGCAGATC
GATCTATACATCTATCTTCTTGTTCCTTTTTCTCTTGAATTGAATCAGAT
AGAAATTCACAATGGCAAAGGCAATTCCTGAGGTAATTCTGAGCTGCGGT
RACGACATTCTAGCCATTCCAGTGATTGGCATGGGAACTGCATACCCTGC
GCCGGATCCAGAAACAGACAAGGCTGCGGTTCTTGAAGCCATTAAAGCCG
GCTACCGCCACTTTGACACCGCCTTAGTTTACGGGTCGGAGAAATATCTA
G
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