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Marker Overview
| Name | s1_35662376 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s1_35662376 |
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| Type | SNP |
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| SNP Alleles | T/G |
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| 5' Flanking Sequence | ATGAAGCTCAAGCTTGCTAAAAGTGAGAAGATGAAGATACCCATTTGCATGCTTCCACTA
ACGCTTATGCTTCTGGCTCTCTCTCACATCTCGTGCGTGGTAGCAGAAGAGAGAGAGCAG
CAGATGAATAAGACCTACATCATTCGCATG |
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| 3' Flanking Sequence | ACAAGTCCAAAATGCCTGCGAGTTTTGGCGACGACCATTTCCAATGGTATGGCTCATCTT
TGAAATCGGTGTCCAAGTCAGCAGACGTGCTCTACACCTACAGAACCATAATTCACGGCT
TCTCCACAAGGCTAACTGCTGAGGAAGCTG |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_35662376 ID=s1_35662376; Name=s1_35662376; organism=Prunus avium; type=genetic_marker; length=301bp
ATGAAGCTCAAGCTTGCTAAAAGTGAGAAGATGAAGATACCCATTTGCAT
GCTTCCACTAACGCTTATGCTTCTGGCTCTCTCTCACATCTCGTGCGTGG
TAGCAGAAGAGAGAGAGCAGCAGATGAATAAGACCTACATCATTCGCATG
KACAAGTCCAAAATGCCTGCGAGTTTTGGCGACGACCATTTCCAATGGTA
TGGCTCATCTTTGAAATCGGTGTCCAAGTCAGCAGACGTGCTCTACACCT
ACAGAACCATAATTCACGGCTTCTCCACAAGGCTAACTGCTGAGGAAGCT
G
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