s1_36420908, s1_36420908 (genetic_marker) Prunus avium

Marker Overview
Names1_36420908
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s1_36420908
TypeSNP
SNP AllelesT/C
5' Flanking SequenceAATAGCAAGCAAAGTCTGAAACAAGGACACATCTTGAAGTTATTTTTCTGAACCGGATTT TTTTTAAAAAAGAATTTAACATTTAATATTCAATATTCAATATTCGGTTGTTTTATATTA TGTACCGGATTATTTGCAGCCACTCCACCA
3' Flanking SequenceCGATAAGGTTAAATTCTTTAACGTTTCCTTCACCGTCCTTGGTTTCGAAATAATGAGCTG GAAGATAAGTTGGTGCTGCTGAGGTTCCAATGCATATGTCGGAGAGTAAGGCATCAAAGC ATGGCTTATGGTTCACCTGAAAAACCACAT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
s1_36420908s1_36420908Prunus aviummarker_locus


Sequence
>s1_36420908 ID=s1_36420908|Name=s1_36420908|organism=Prunus avium|type=genetic_marker|length=301bp
AATAGCAAGCAAAGTCTGAAACAAGGACACATCTTGAAGTTATTTTTCTG
AACCGGATTTTTTTTAAAAAAGAATTTAACATTTAATATTCAATATTCAA
TATTCGGTTGTTTTATATTATGTACCGGATTATTTGCAGCCACTCCACCA
YCGATAAGGTTAAATTCTTTAACGTTTCCTTCACCGTCCTTGGTTTCGAA
ATAATGAGCTGGAAGATAAGTTGGTGCTGCTGAGGTTCCAATGCATATGT
CGGAGAGTAAGGCATCAAAGCATGGCTTATGGTTCACCTGAAAAACCACA
T
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ra-F1RaLG1N/A106.31s1_36420908View
2Sweet Cherry-RaxRi-F1LG1N/A91.25s1_36420908View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 1N/A36420908s1_36420908View
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:37394086..37394086. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:32467400..32467400. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)