s2_20417101, s2_20417101 (genetic_marker) Prunus avium

Marker Overview
Names2_20417101
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s2_20417101
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTCAGACACCAGCCTCATGCAAAGATACTTGAACCACTTCACTCCAGCAGCACAGTGGGTT ATTTCTTCAGGGTAAACCACGCTCTCTAGCAAATCAGCTGTTGTGTCGTCGCCTCCTTTT CGGAACCGGGAGATGGTTGTTGGCAGCACA
3' Flanking SequenceCCAGCCCTCTTGCCTCATGCACGCAATGCTCGACAGCCAGGCGTGCGGTTAGGTCTTTGG AAGTGGCAGCGGCAGAGGCCCAGAGGCCATCGTGAGCCGGCAATGCTCCATAGAAAGAAC CCATCTCCTCAAGCCGAGCTGCGAGGAGAG
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ra-F1RaLG2N/A47.25s2_20417101View
2Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 2N/A20417101s2_20417101View
Sequence
>s2_20417101 ID=s2_20417101; Name=s2_20417101; organism=Prunus avium; type=genetic_marker; length=301bp
TCAGACACCAGCCTCATGCAAAGATACTTGAACCACTTCACTCCAGCAGC
ACAGTGGGTTATTTCTTCAGGGTAAACCACGCTCTCTAGCAAATCAGCTG
TTGTGTCGTCGCCTCCTTTTCGGAACCGGGAGATGGTTGTTGGCAGCACA
YCCAGCCCTCTTGCCTCATGCACGCAATGCTCGACAGCCAGGCGTGCGGT
TAGGTCTTTGGAAGTGGCAGCGGCAGAGGCCCAGAGGCCATCGTGAGCCG
GCAATGCTCCATAGAAAGAACCCATCTCCTCAAGCCGAGCTGCGAGGAGA
G
Alignments
Feature NameTypeLocationAnalysis
Pp02 chromosome Pp02:23992645..23992645. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr2 chromosome PAV_r1.0chr2:18115082..18115082. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)