s2_26293818, s2_26293818 (genetic_marker) Prunus avium

Marker Overview
Names2_26293818
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s2_26293818
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCTGCAGGGCGCTCAAATGCAATCAATATAGCTGAAAGGTTAGGACTACCTGGTAAAGT
3' Flanking SequenceGTAGA
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ra-F1RaLG2N/A68.72s2_26293818View
2Sweet Cherry-RaxRi-F1LG2N/A75.59s2_26293818View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 2N/A26293818s2_26293818View
4Sweet Cherry-RosBREED-3.8K-20202N/A70.44s2_26293818View
Sequence
>s2_26293818 ID=s2_26293818; Name=s2_26293818; organism=Prunus avium; type=genetic_marker; length=64bp
CTGCAGGGCGCTCAAATGCAATCAATATAGCTGAAAGGTTAGGACTACCT
GGTAAAGTRGTAGA
Alignments
Feature NameTypeLocationAnalysis
Pp02 chromosome Pp02:29891112..29891112. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr2 chromosome PAV_r1.0chr2:24747221..24747221. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)