s2_3867998, s2_3867998 (genetic_marker) Prunus avium

Marker Overview
Names2_3867998
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s2_3867998
TypeSNP
SNP AllelesA/C
5' Flanking SequenceCAGCCAGAT
3' Flanking SequenceACTGTGGCTACCCTGGATTTGATTTATCCTGCAATGGAAGCAACAATACGGTGC
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ra-F1RaLG2N/A12.84s2_3867998View
2Sweet Cherry-RaxRi-F1LG2N/A16.98s2_3867998View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 2N/A3867998s2_3867998View
4Sweet Cherry-RosBREED-3.8K-20202N/A7.6s2_3867998View
Sequence
>s2_3867998 ID=s2_3867998; Name=s2_3867998; organism=Prunus avium; type=genetic_marker; length=64bp
CAGCCAGATMACTGTGGCTACCCTGGATTTGATTTATCCTGCAATGGAAG
CAACAATACGGTGC
Alignments
Feature NameTypeLocationAnalysis
Pp02 chromosome Pp02:5472816..5472816. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)