s3_1440140, s3_1440140 (genetic_marker) Prunus avium

Marker Overview
Names3_1440140
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s3_1440140
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAGAAGCGGTGGCTGCTGCCCCAGAGAAGAGCAGCACTAGATATGTGATCAGAATAAAGGC AGGGGTGTACAGAGAAAATGTGGACGTGCCTAAGAAAAAGACCAACATCATGTTTTTGGG AGATGGGAGGACCAGCACTATCATCACTGC
3' Flanking SequenceAGTAGAAACGTGGTGGATGGCAGCACAACTTTCAATTCTGCCACAGTTGGTAAGTCAAAA TTTTGAATTTTGAATGTCCCCAACTATTTTTGTTTATTTTATGTTTTTGATTTCTTCAAC ATATATTTGTATAGTGTGGGATAGAGCTCC
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ri-F1RiLG3N/A1.31s3_1440140View
2Sweet Cherry-RaxRi-F1LG3N/A8.28s3_1440140View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 3N/A1440140s3_1440140View
4Sweet Cherry-RosBREED-3.8K-20203N/A10.56s3_1440140View
5Sweet Cherry-C-F1-6+9K_array3N/A5.76s3_1440140View
6Sweet Cherry-VxC-F1-6+9K_array3N/A5.76s3_1440140View
Sequence
>s3_1440140 ID=s3_1440140; Name=s3_1440140; organism=Prunus avium; type=genetic_marker; length=301bp
AGAAGCGGTGGCTGCTGCCCCAGAGAAGAGCAGCACTAGATATGTGATCA
GAATAAAGGCAGGGGTGTACAGAGAAAATGTGGACGTGCCTAAGAAAAAG
ACCAACATCATGTTTTTGGGAGATGGGAGGACCAGCACTATCATCACTGC
RAGTAGAAACGTGGTGGATGGCAGCACAACTTTCAATTCTGCCACAGTTG
GTAAGTCAAAATTTTGAATTTTGAATGTCCCCAACTATTTTTGTTTATTT
TATGTTTTTGATTTCTTCAACATATATTTGTATAGTGTGGGATAGAGCTC
C
Alignments
Feature NameTypeLocationAnalysis
Pp03 chromosome Pp03:2302090..2302090. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3 chromosome PAV_r1.0chr3:1380515..1380515. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)