s3_15472030, s3_15472030 (genetic_marker) Prunus avium

Marker Overview
Names3_15472030
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s3_15472030
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTGGGATTTTATGCAGGCATTCTCTTCGCGTACTTGTAGTGAAGAACTACTTTCAACTCCC TGAAAAATATTTTCTGCTCCGTTGGCGGGTAGAAAGTTCATTGGTTTCTGTGGATGATCA AAATGCTCAAATCAGCAGCGACGATTGTGC
3' Flanking SequenceCAGGCCTTCCACAGTCTTACTGCTAGTTTATTGACAGAGTCCTTAATCTCCAAGGACAGA TTTAATTATGTCCATAACGAACTTACGAGTCTTCTTGAGCATGTTAGAAATATGCCAGTA ATCGACGAATATGCTGCAAATGCAGCAGCT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
s3_15472030s3_15472030Prunus aviummarker_locus


Sequence
>s3_15472030 ID=s3_15472030|Name=s3_15472030|organism=Prunus avium|type=genetic_marker|length=301bp
TGGGATTTTATGCAGGCATTCTCTTCGCGTACTTGTAGTGAAGAACTACT
TTCAACTCCCTGAAAAATATTTTCTGCTCCGTTGGCGGGTAGAAAGTTCA
TTGGTTTCTGTGGATGATCAAAATGCTCAAATCAGCAGCGACGATTGTGC
YCAGGCCTTCCACAGTCTTACTGCTAGTTTATTGACAGAGTCCTTAATCT
CCAAGGACAGATTTAATTATGTCCATAACGAACTTACGAGTCTTCTTGAG
CATGTTAGAAATATGCCAGTAATCGACGAATATGCTGCAAATGCAGCAGC
T
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ra-F1RaLG3N/A55.18s3_15472030View
2Sweet Cherry-RaxRi-F1LG3N/A64.59s3_15472030View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 3N/A15472030s3_15472030View
4Sweet Cherry-RosBREED-3.8K-20203N/A60.35s3_15472030View
5Sweet Cherry-C-F1-6+9K_array3N/A63.33s3_15472030View
6Sweet Cherry-VxC-F1-6+9K_array3N/A68.96s3_15472030View
Alignments
Feature NameTypeLocationAnalysis
Pp03 chromosome Pp03:20815041..20815041. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3 chromosome PAV_r1.0chr3:14712851..14712851. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)