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Marker Overview
| Name | s3_15681566 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s3_15681566 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | GAAGAGGCTATCTAAGCTTGCCGAGTTGTTCAAAGTGCCATTTGAGTTCCATGCTGCTGC
CATGTCTGGTTGCGAGGTTCAGCTGAAGCATCTTGGTGTTCGACCTGGGGAGGCATTGGC
TATGAACTTTGCATTCATGCTGCACCACAT |
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| 3' Flanking Sequence | CCAGATGAGAGTGTCAGCACTCAGAATCATCGCGACCGGTTGTTGAGGTTGGTTAAGAGC
CTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCTAACACAAACACTGCTGCATTC
TTTCCACGGTTTGTGGAAACACTAAATTAC |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_15681566 ID=s3_15681566; Name=s3_15681566; organism=Prunus avium; type=genetic_marker; length=301bp
GAAGAGGCTATCTAAGCTTGCCGAGTTGTTCAAAGTGCCATTTGAGTTCC
ATGCTGCTGCCATGTCTGGTTGCGAGGTTCAGCTGAAGCATCTTGGTGTT
CGACCTGGGGAGGCATTGGCTATGAACTTTGCATTCATGCTGCACCACAT
RCCAGATGAGAGTGTCAGCACTCAGAATCATCGCGACCGGTTGTTGAGGT
TGGTTAAGAGCCTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCT
AACACAAACACTGCTGCATTCTTTCCACGGTTTGTGGAAACACTAAATTA
C
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