s3_18466073, s3_18466073 (genetic_marker) Prunus avium

Marker Overview


Name	s3_18466073
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	ATTGTAACTGATGCAACAGAAGGAAAAAACGTTGTGTATACTGTTGTAAAGCCACAGTGG CTTGGGGCTGTTGAGGACATAAAAATGGAGAAGGGTCATCAAGAGGCAGCACCTTCAAAT CAGGACGAGGCTGGTGAATTCGTTGACTAC
3' Flanking Sequence	AAGACAGGAAGAAAATTTTGGAGAATGTCAGTGATGCTAAAGTTAACATGGAATCTGGGA TTGAAAATGCTGCTCCTGGTTTGATTATACGGAAGCGGAAACAAGTTCATGAGTCTAAAG GTAATGATAGTGATTCTCGTCAACAGCCGG
Species	Prunus avium
Publication	[view all]
Contact	Patricio Hinrichsen Stijn Vanderzande
Comment	sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped

Contact

Name

Details

Patricio Hinrichsen

First name:	Patricio
Last name:	Hinrichsen
Title:	Investigator, R&D SubDirector
Institution:	Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:	Santa Rosa 11610, La Pintana
Country:	Chile
Email:	phinrichsen@inia.cl
Phone:	56 2 25779101
Fax:	56 2 25779104
Keywords:	Plant genetics and breeding

Stijn Vanderzande

First name:	Stijn
Last name:	Vanderzande
Address:	Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:	Belgium
Email:	stijn.vanderzande@wsu.edu

Publications


Year	Publication
2015	Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015.
2020	Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-RaxRi-F1	LG3	N/A	77.24	s3_18466073	View
2	Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0	scaffold 3	N/A	18466073	s3_18466073	View

Sequence

>s3_18466073 ID=s3_18466073; Name=s3_18466073; organism=Prunus avium; type=genetic_marker; length=301bp
ATTGTAACTGATGCAACAGAAGGAAAAAACGTTGTGTATACTGTTGTAAA
GCCACAGTGGCTTGGGGCTGTTGAGGACATAAAAATGGAGAAGGGTCATC
AAGAGGCAGCACCTTCAAATCAGGACGAGGCTGGTGAATTCGTTGACTAC
MAAGACAGGAAGAAAATTTTGGAGAATGTCAGTGATGCTAAAGTTAACAT
GGAATCTGGGATTGAAAATGCTGCTCCTGGTTTGATTATACGGAAGCGGA
AACAAGTTCATGAGTCTAAAGGTAATGATAGTGATTCTCGTCAACAGCCG
G

Alignments

Feature Name	Type	Location	Analysis
Pp03	chromosome	Pp03:23808736..23808736.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)