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Marker Overview
| Name | s3_20844524 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | GTGAAAAAATTAATGACCAGAAGCTCCCAAATGGAGAAGATAATAAGAAAAGCGAGGAGA
AGCCCCAAGAAAATGGCAATCAGATTCAGAATAATGAGAACTTCTCAGGCTGTTGCCAGG
GTGCTAATGGATTTACATGCTGCAAAGATG |
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| 3' Flanking Sequence | AAGTTTGGAGCAGAACAGTGGAAGCGAGGAAAAGAAACTGAAAGAAACCACAGAAGCATG
TGGCAAGAAGGATGCCTTGGGCAGGCTGTCAAGTTTGATCGGAAAATGGGAGCAAAGTGA
TGTTCTTGCAGCTGCAGCCGTGGTTGGAGC |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_20844524 ID=s3_20844524; Name=s3_20844524; organism=Prunus avium; type=genetic_marker; length=301bp
GTGAAAAAATTAATGACCAGAAGCTCCCAAATGGAGAAGATAATAAGAAA
AGCGAGGAGAAGCCCCAAGAAAATGGCAATCAGATTCAGAATAATGAGAA
CTTCTCAGGCTGTTGCCAGGGTGCTAATGGATTTACATGCTGCAAAGATG
YAAGTTTGGAGCAGAACAGTGGAAGCGAGGAAAAGAAACTGAAAGAAACC
ACAGAAGCATGTGGCAAGAAGGATGCCTTGGGCAGGCTGTCAAGTTTGAT
CGGAAAATGGGAGCAAAGTGATGTTCTTGCAGCTGCAGCCGTGGTTGGAG
C
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp03 |
chromosome |
Pp03:26186951..26186951. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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