s3_208499, s3_208499 (genetic_marker) Prunus avium

Marker Overview
Names3_208499
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s3_208499
TypeSNP
SNP AllelesT/G
5' Flanking SequenceCTGCTCTAAGCCAAATCAGGTGCGCTAGTCTAGTTTCTCGTTGGATCCAG
3' Flanking SequenceTGTGAATTTCTGA
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
s3_208499s3_208499Prunus aviummarker_locus


Sequence
>s3_208499 ID=s3_208499|Name=s3_208499|organism=Prunus avium|type=genetic_marker|length=64bp
CTGCTCTAAGCCAAATCAGGTGCGCTAGTCTAGTTTCTCGTTGGATCCAG
KTGTGAATTTCTGA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ra-F1RaLG3N/A0.03s3_208499View
2Sweet Cherry-RaxRi-F1LG3N/A5.51s3_208499View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 3N/A208499s3_208499View
4Sweet Cherry-RosBREED-3.8K-20203N/A2.28s3_208499View
Alignments
Feature NameTypeLocationAnalysis
Pp03 chromosome Pp03:1070294..1070294. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3 chromosome PAV_r1.0chr3:189619..189619. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)