|
Marker Overview
Name | s3_21541212 |
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | T/G |
5' Flanking Sequence | GCCCCAGGGTCCCACTAAGATAGTATGATTCCCCTTAATCTAAAATCTCCGAACAAAGTA
GACTAGAGCAAACAAAAACAAAAACAAAAACAAAACCTCACCCCCTTTATATATGTAATG
TAATGTAACTGCTTACTGCTGCAATGCAAT |
3' Flanking Sequence | CAACAACATCCTTTATGGTCTATGTCTGTGAAAACCCCATATCTTTAGCTGCTGCTGCCT
GTACTGTAATACATGATCCCATTATAAATTTTATAACTCTGTTTTCCAGTGGCTTTTAAA
AATTTGTATCCTTTTTAAAACATATCTCAA |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
|
Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_21541212 ID=s3_21541212; Name=s3_21541212; organism=Prunus avium; type=genetic_marker; length=301bp GCCCCAGGGTCCCACTAAGATAGTATGATTCCCCTTAATCTAAAATCTCC GAACAAAGTAGACTAGAGCAAACAAAAACAAAAACAAAAACAAAACCTCA CCCCCTTTATATATGTAATGTAATGTAACTGCTTACTGCTGCAATGCAAT KCAACAACATCCTTTATGGTCTATGTCTGTGAAAACCCCATATCTTTAGC TGCTGCTGCCTGTACTGTAATACATGATCCCATTATAAATTTTATAACTC TGTTTTCCAGTGGCTTTTAAAAATTTGTATCCTTTTTAAAACATATCTCA A
Alignments
Feature Name | Type | Location | Analysis |
Pp03 |
chromosome |
Pp03:26883663..26883663. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
|