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Marker Overview
| Name | s3_5616597 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s3_5616597 |
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| Type | SNP |
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| SNP Alleles | A/C |
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| 5' Flanking Sequence | GAGCGCGTGGTGACGAAGCCGACATCAAAGGGCGGAGACGACGAGGGAACCATTCCGAGC
GTGAACTCGACGCTCCCGAAGAAGAGGAAGCCCATTGCGAAGACACAGGGTATCCAATGG
TGCTTGGCCACGTAGAGGACGTCATGCAGC |
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| 3' Flanking Sequence | TCCAGGTCATGAAGGAGGCCTTGCCGCCGTAGACATGGAGCTTCTTGGAGGAAGAAGAAG
ACGACATGATCAGGTCCTGCTGCTTTTTCGCCGAGGCTTGAGGGCTGAAACGGTGCCGTT
CATTTGTAGGCGCAACTGAGAGGCCCTTTC |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_5616597 ID=s3_5616597; Name=s3_5616597; organism=Prunus avium; type=genetic_marker; length=301bp
GAGCGCGTGGTGACGAAGCCGACATCAAAGGGCGGAGACGACGAGGGAAC
CATTCCGAGCGTGAACTCGACGCTCCCGAAGAAGAGGAAGCCCATTGCGA
AGACACAGGGTATCCAATGGTGCTTGGCCACGTAGAGGACGTCATGCAGC
MTCCAGGTCATGAAGGAGGCCTTGCCGCCGTAGACATGGAGCTTCTTGGA
GGAAGAAGAAGACGACATGATCAGGTCCTGCTGCTTTTTCGCCGAGGCTT
GAGGGCTGAAACGGTGCCGTTCATTTGTAGGCGCAACTGAGAGGCCCTTT
C
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