s3_6781685, s3_6781685 (genetic_marker) Prunus avium

Marker Overview
Names3_6781685
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s3_6781685
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTGCTTTCTTGAGCTCTTCTTTGGAGTACATCCGAATCGGATTACAATTCCCATAGAAAGA ATGTATAAGCTGTTCTAAAATGGCAGCTCCATTCTTCAAGAAGCATCCCTCCTCTTTTGT CTTGTATTTCTTGTTTCTGAAGCATGATAG
3' Flanking SequenceATATTCGAAGATTGGTTTTCAGTTGCCAAAGTTGCAGCACTATCTGTGGACTAGCCTGCT TTTGTGGTCCTGTTTCAGCTGACAGTTAACTAGGGGCTTAACTTGTTGACTAATAATTCT TTAGGAACTGTCCTGGTTTTTTCTGGGTGT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ri-F1RiLG3N/A34.59s3_6781685View
2Sweet Cherry-RaxRi-F1LG3N/A42.51s3_6781685View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 3N/A6781685s3_6781685View
4Sweet Cherry-RosBREED-3.8K-20203N/A32.47s3_6781685View
5Sweet Cherry-C-F1-6+9K_array3N/A32.41s3_6781685View
6Sweet Cherry-VxC-F1-6+9K_array3N/A32.74s3_6781685View
Sequence
>s3_6781685 ID=s3_6781685; Name=s3_6781685; organism=Prunus avium; type=genetic_marker; length=301bp
TGCTTTCTTGAGCTCTTCTTTGGAGTACATCCGAATCGGATTACAATTCC
CATAGAAAGAATGTATAAGCTGTTCTAAAATGGCAGCTCCATTCTTCAAG
AAGCATCCCTCCTCTTTTGTCTTGTATTTCTTGTTTCTGAAGCATGATAG
YATATTCGAAGATTGGTTTTCAGTTGCCAAAGTTGCAGCACTATCTGTGG
ACTAGCCTGCTTTTGTGGTCCTGTTTCAGCTGACAGTTAACTAGGGGCTT
AACTTGTTGACTAATAATTCTTTAGGAACTGTCCTGGTTTTTTCTGGGTG
T
Alignments
Feature NameTypeLocationAnalysis
Pp03 chromosome Pp03:7641483..7641483. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3 chromosome PAV_r1.0chr3:7362761..7362761. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)