s4_1287822, s4_1287822 (genetic_marker) Prunus avium

Marker Overview


Name	s4_1287822
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	TTTCACTCCCAACAGCACCTACGAATTCAATCTTAATCTGCTGCTCTCTTCACTCACCTC CAATGCCACCCGTGAACTTGGTTTCTACAACACCACCGCCGGCTCCCAAGACCCCAACAC TGCAGTTTACGGCTCCTTTCTATGCCGTGC
3' Flanking Sequence	GATCTCACATCAGATGCATGCCAAGATTGTGTGGCTACTGCAGCCAGAGACGCGGTCCAA GAGTACTGCCCCTTAAGAAAAGTCACCACAATTTGGTACGACGATTGCATGTTACGCTAC TCAAACGTGTCTTTTTTTGGCCATATGGAT
Species	Prunus avium
Publication	[view all]
Contact	Patricio Hinrichsen Stijn Vanderzande
Comment	sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped

Contact

Name

Details

Patricio Hinrichsen

First name:	Patricio
Last name:	Hinrichsen
Title:	Investigator, R&D SubDirector
Institution:	Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:	Santa Rosa 11610, La Pintana
Country:	Chile
Email:	phinrichsen@inia.cl
Phone:	56 2 25779101
Fax:	56 2 25779104
Keywords:	Plant genetics and breeding

Stijn Vanderzande

First name:	Stijn
Last name:	Vanderzande
Address:	Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:	Belgium
Email:	stijn.vanderzande@wsu.edu

Publications


Year	Publication
2015	Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015.
2020	Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-Ri-F1	RiLG4	N/A	2.22	s4_1287822	View
2	Sweet Cherry-RaxRi-F1	LG4	N/A	2.21	s4_1287822	View
3	Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0	scaffold 4	N/A	1287822	s4_1287822	View

Sequence

>s4_1287822 ID=s4_1287822; Name=s4_1287822; organism=Prunus avium; type=genetic_marker; length=301bp
TTTCACTCCCAACAGCACCTACGAATTCAATCTTAATCTGCTGCTCTCTT
CACTCACCTCCAATGCCACCCGTGAACTTGGTTTCTACAACACCACCGCC
GGCTCCCAAGACCCCAACACTGCAGTTTACGGCTCCTTTCTATGCCGTGC
YGATCTCACATCAGATGCATGCCAAGATTGTGTGGCTACTGCAGCCAGAG
ACGCGGTCCAAGAGTACTGCCCCTTAAGAAAAGTCACCACAATTTGGTAC
GACGATTGCATGTTACGCTACTCAAACGTGTCTTTTTTTGGCCATATGGA
T

Alignments

Feature Name	Type	Location	Analysis
Pp04	chromosome	Pp04:1287909..1287909.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)