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Marker Overview
| Name | s4_23042765 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | T/G |
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| 5' Flanking Sequence | AAAGCATAGAATCAAATGTAACCAAAAAAGAAGGGCAAGTGATGATAACATCTCTCCTTT
ATGAGAATCTAGATGTAAACCAGATCCGTGGTTTGGATTCAAGTTAGGCCCACCCCGACA
TGTTCACTTTCGCAGCGTCTACCTTTATCC |
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| 3' Flanking Sequence | CCCTTTTAGTTTTAAAATAGAGAAAGAAAGAAAGACCAAATTCGTTTGTCTAAAAGGCAG
CCGTGACTTATGTCGGCTGTGTGCTCGCCCTCTTACACTTGAGTTTGATTATTTTTCGTG
CATTAAAATACAGTAATTTGGAATATCAAC |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s4_23042765 ID=s4_23042765; Name=s4_23042765; organism=Prunus avium; type=genetic_marker; length=301bp
AAAGCATAGAATCAAATGTAACCAAAAAAGAAGGGCAAGTGATGATAACA
TCTCTCCTTTATGAGAATCTAGATGTAAACCAGATCCGTGGTTTGGATTC
AAGTTAGGCCCACCCCGACATGTTCACTTTCGCAGCGTCTACCTTTATCC
KCCCTTTTAGTTTTAAAATAGAGAAAGAAAGAAAGACCAAATTCGTTTGT
CTAAAAGGCAGCCGTGACTTATGTCGGCTGTGTGCTCGCCCTCTTACACT
TGAGTTTGATTATTTTTCGTGCATTAAAATACAGTAATTTGGAATATCAA
C
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp04 |
chromosome |
Pp04:19439593..19439593. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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