s4_6350127, s4_6350127 (genetic_marker) Prunus avium

Marker Overview
Names4_6350127
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s4_6350127
TypeSNP
SNP AllelesT/G
5' Flanking SequenceAGAGTAGGATATCCCATTTGTCATTTCCATGGTCGGAAGCACTGAAAATTTGACAGCATC ATGCAGTCTGCAGACCAGAAATAGTGATTAAGAATCCATTTGATTAATGTATGTTGGTTT TCATTTTCTGTCAGCTGCTATTGATGATGT
3' Flanking SequenceATTTTGCCATCACAAGCTCCTTTCTGGAACTTGCCACGGTTGATGCATTCTTCGCCCCTT ATTTTTCAGATAAATTTTAGTGTTGGGAGGAAAATCATAGTTGCACTTACTTTTTGACTC AAAGCGATTGAACTCTCATATATTTGGGCT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
s4_6350127s4_6350127Prunus aviummarker_locus


Sequence
>s4_6350127 ID=s4_6350127|Name=s4_6350127|organism=Prunus avium|type=genetic_marker|length=301bp
AGAGTAGGATATCCCATTTGTCATTTCCATGGTCGGAAGCACTGAAAATT
TGACAGCATCATGCAGTCTGCAGACCAGAAATAGTGATTAAGAATCCATT
TGATTAATGTATGTTGGTTTTCATTTTCTGTCAGCTGCTATTGATGATGT
KATTTTGCCATCACAAGCTCCTTTCTGGAACTTGCCACGGTTGATGCATT
CTTCGCCCCTTATTTTTCAGATAAATTTTAGTGTTGGGAGGAAAATCATA
GTTGCACTTACTTTTTGACTCAAAGCGATTGAACTCTCATATATTTGGGC
T
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ri-F1RiLG4N/A18.94s4_6350127View
2Sweet Cherry-RaxRi-F1LG4N/A19.05s4_6350127View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 4N/A6350127s4_6350127View
4Sweet Cherry-RosBREED-3.8K-20204N/A20.73s4_6350127View
5Sweet Cherry-C-F1-6+9K_array4N/A33.48s4_6350127View
6Sweet Cherry-VxC-F1-6+9K_array4N/A29.41s4_6350127View
Alignments
Feature NameTypeLocationAnalysis
Pp04 chromosome Pp04:6350096..6350096. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr4 chromosome PAV_r1.0chr4:8395894..8395894. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)