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Marker Overview
Name | s4_6350127 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s4_6350127 |
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Type | SNP |
SNP Alleles | T/G |
5' Flanking Sequence | AGAGTAGGATATCCCATTTGTCATTTCCATGGTCGGAAGCACTGAAAATTTGACAGCATC
ATGCAGTCTGCAGACCAGAAATAGTGATTAAGAATCCATTTGATTAATGTATGTTGGTTT
TCATTTTCTGTCAGCTGCTATTGATGATGT |
3' Flanking Sequence | ATTTTGCCATCACAAGCTCCTTTCTGGAACTTGCCACGGTTGATGCATTCTTCGCCCCTT
ATTTTTCAGATAAATTTTAGTGTTGGGAGGAAAATCATAGTTGCACTTACTTTTTGACTC
AAAGCGATTGAACTCTCATATATTTGGGCT |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s4_6350127 ID=s4_6350127; Name=s4_6350127; organism=Prunus avium; type=genetic_marker; length=301bp AGAGTAGGATATCCCATTTGTCATTTCCATGGTCGGAAGCACTGAAAATT TGACAGCATCATGCAGTCTGCAGACCAGAAATAGTGATTAAGAATCCATT TGATTAATGTATGTTGGTTTTCATTTTCTGTCAGCTGCTATTGATGATGT KATTTTGCCATCACAAGCTCCTTTCTGGAACTTGCCACGGTTGATGCATT CTTCGCCCCTTATTTTTCAGATAAATTTTAGTGTTGGGAGGAAAATCATA GTTGCACTTACTTTTTGACTCAAAGCGATTGAACTCTCATATATTTGGGC T
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