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Marker Overview
Name | s5_13924258 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s5_13924258 |
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Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | AAAATCAAGCAGATAACATTATCAAGACACAGTTTTGATAAGATTTTGTAATCCACCATA
AGTTCCTGACCGCAAAATAAATTTGGTTAGACAAAGAATTATCTAAAATATGAACAAGAA
AACTCTTCTCTACTCTTACTTGATGGCAGC |
3' Flanking Sequence | TTGACTTCATCATAAGTAGCTGACTTTGCCAGCCTCACGGTAAGGTCAACCACTGAGACA
TCAACAGTAGGAACACGGAAAGACATTCCCGTCAATTTTCCGTTCAGATCAGGCAGCACT
TTACCAACAGCCTTCGCCAGAGAAGATACA |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s5_13924258 ID=s5_13924258; Name=s5_13924258; organism=Prunus avium; type=genetic_marker; length=301bp AAAATCAAGCAGATAACATTATCAAGACACAGTTTTGATAAGATTTTGTA ATCCACCATAAGTTCCTGACCGCAAAATAAATTTGGTTAGACAAAGAATT ATCTAAAATATGAACAAGAAAACTCTTCTCTACTCTTACTTGATGGCAGC YTTGACTTCATCATAAGTAGCTGACTTTGCCAGCCTCACGGTAAGGTCAA CCACTGAGACATCAACAGTAGGAACACGGAAAGACATTCCCGTCAATTTT CCGTTCAGATCAGGCAGCACTTTACCAACAGCCTTCGCCAGAGAAGATAC A
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