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Marker Overview
| Name | s5_17285162 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s5_17285162 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | TATTTACCGGGTAGAACGGACAACGAAATCAAGAACTACTGGAGAACAAGGGTGCAGAAA
CAAGCACGGCATCTTAAAGTTGACACCAACAGCACAGAATTCCAAAATATTATCAGGTGC
TTTTGGATGCCAAGATTGCTGCAGAAGATA |
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| 3' Flanking Sequence | GAGGAGAATCATCGTTTTCTTCCCCCATGTTAATCCAAAACCCGATGGCTTTGCAGCCTC
TTGACAATGTTTCTCAGCATTTAACAGCAGCAACAGCATCACCTCCACAAATTCCTGGGC
AGGGAGCTCTTAATATGAGTGGAACAATAT |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s5_17285162 ID=s5_17285162; Name=s5_17285162; organism=Prunus avium; type=genetic_marker; length=301bp
TATTTACCGGGTAGAACGGACAACGAAATCAAGAACTACTGGAGAACAAG
GGTGCAGAAACAAGCACGGCATCTTAAAGTTGACACCAACAGCACAGAAT
TCCAAAATATTATCAGGTGCTTTTGGATGCCAAGATTGCTGCAGAAGATA
RGAGGAGAATCATCGTTTTCTTCCCCCATGTTAATCCAAAACCCGATGGC
TTTGCAGCCTCTTGACAATGTTTCTCAGCATTTAACAGCAGCAACAGCAT
CACCTCCACAAATTCCTGGGCAGGGAGCTCTTAATATGAGTGGAACAATA
T
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