s5_674862, s5_674862 (genetic_marker) Prunus avium

Marker Overview
Names5_674862
dbSNP IDN/A
TypeSNP
SNP AllelesT/G
5' Flanking SequenceGTGCTCTCTTCAACAGAAAACGTAATGAAAAAAACCCAAGAGCCAAGGTCTGCCAAAACC ATCCTCTTGAGTTAGCAGGGTCCACCCTTTTTGCCAGCTTCCACGCGTATACAGCCTCTC CAATATGTGCTGCTGCAGCTAGGAGAAACG
3' Flanking SequenceTGTCCTAACTACTCTCATTGACCGGAGAAAGAAGAGGCTAATAGCTCTGAAGAGTGGCAC AGGTCCAATGTCTGGCAGATAAGCAGCACAGAATAGCGTGGCCATTCCAAGCACACAAAA TAGCCATGCATATATTGTAGGCCCATCCAG
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ra-F1RaLG5N/A2.44s5_674862View
2Sweet Cherry-RaxRi-F1LG5N/A10.83s5_674862View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 5N/A674862s5_674862View
Sequence
>s5_674862 ID=s5_674862; Name=s5_674862; organism=Prunus avium; type=genetic_marker; length=301bp
GTGCTCTCTTCAACAGAAAACGTAATGAAAAAAACCCAAGAGCCAAGGTC
TGCCAAAACCATCCTCTTGAGTTAGCAGGGTCCACCCTTTTTGCCAGCTT
CCACGCGTATACAGCCTCTCCAATATGTGCTGCTGCAGCTAGGAGAAACG
KTGTCCTAACTACTCTCATTGACCGGAGAAAGAAGAGGCTAATAGCTCTG
AAGAGTGGCACAGGTCCAATGTCTGGCAGATAAGCAGCACAGAATAGCGT
GGCCATTCCAAGCACACAAAATAGCCATGCATATATTGTAGGCCCATCCA
G
Alignments
Feature NameTypeLocationAnalysis
Pp05 chromosome Pp05:674846..674846. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)