s5_8793208, s5_8793208 (genetic_marker) Prunus avium

Marker Overview
Names5_8793208
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s5_8793208
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAAATTCCAATGCAAAAGGAAACGAAACGATTACAAGCGACAACCGTTCACCGATTGTTAA TTCCCCATTCTTTCATGCGCTGAATGAAAAACTGCAACAGAGGAAGAAGAAGAAGATTAA TACGAATAATTAATAAATATACGCAGCGTC
3' Flanking SequenceAGTTGCGTCAATCAAAATCGAAATTAATTACGAGAAATGAAAATGCAGGCATGCATATGT CGATCGTCACCATCAAAAAATGTGAAAATTGATTTTAGGCTATTTTGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAAGGCTCCTCTGCTT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ra-F1RaLG5N/A18.45s5_8793208View
2Sweet Cherry-RaxRi-F1LG5N/A26.95s5_8793208View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 5N/A8793208s5_8793208View
Sequence
>s5_8793208 ID=s5_8793208; Name=s5_8793208; organism=Prunus avium; type=genetic_marker; length=301bp
AAATTCCAATGCAAAAGGAAACGAAACGATTACAAGCGACAACCGTTCAC
CGATTGTTAATTCCCCATTCTTTCATGCGCTGAATGAAAAACTGCAACAG
AGGAAGAAGAAGAAGATTAATACGAATAATTAATAAATATACGCAGCGTC
RAGTTGCGTCAATCAAAATCGAAATTAATTACGAGAAATGAAAATGCAGG
CATGCATATGTCGATCGTCACCATCAAAAAATGTGAAAATTGATTTTAGG
CTATTTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCTCCTCTGCT
T
Alignments
Feature NameTypeLocationAnalysis
Pp05 chromosome Pp05:8794070..8794070. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:6559013..6559013. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)