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Marker Overview
| Name | s6_20604077 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s6_20604077 |
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| Type | SNP |
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| SNP Alleles | T/G |
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| 5' Flanking Sequence | ACCGGGCCTAGTGTCTGAGATATCTGCAGTCCTTGTTGAGTTGGGCTGCAACATCACTAC
TGCCGTGGCTTGGACCCACGGTACCCGGGCGGCCAGCATTTTCTACGTGGAAGATGGGCT
GGAAGGTGGGCCCATAACAGACCCAATTCG |
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| 3' Flanking Sequence | CTGGCCCATGTACAGGAGCAGCTAGAGAATGTAGTTAAAGCCCATCATGAGGAGGGGGAG
AAGAGGAGTGTAAGGCTGACCACCCCAGCAGGTGGCCACACCCACAAGGAGCGGCGGCTC
CACCAGTTGATGTATGCCGACGAGGACTAT |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s6_20604077 ID=s6_20604077; Name=s6_20604077; organism=Prunus avium; type=genetic_marker; length=301bp
ACCGGGCCTAGTGTCTGAGATATCTGCAGTCCTTGTTGAGTTGGGCTGCA
ACATCACTACTGCCGTGGCTTGGACCCACGGTACCCGGGCGGCCAGCATT
TTCTACGTGGAAGATGGGCTGGAAGGTGGGCCCATAACAGACCCAATTCG
KCTGGCCCATGTACAGGAGCAGCTAGAGAATGTAGTTAAAGCCCATCATG
AGGAGGGGGAGAAGAGGAGTGTAAGGCTGACCACCCCAGCAGGTGGCCAC
ACCCACAAGGAGCGGCGGCTCCACCAGTTGATGTATGCCGACGAGGACTA
T
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp06 |
chromosome |
Pp06:22468431..22468431. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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