s6_3912141, s6_3912141 (genetic_marker) Prunus avium

Marker Overview
Names6_3912141
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s6_3912141
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGATTATGCATCGCTTCACTGCAAAGGAATTCCCGAATGCTACTACGAAGCACAGCAAGGC CATCTGCAAACCGACTGTAAGGAGTCTTCCCAGCACCTTTAAGCTGCAGTTCCCACCTTT CAGATTTAGAATTAAGAACCTCCCCAAGAG
3' Flanking SequenceAATAGCCCGACCATCTCCCAACTGTCCAGCCCACATTCCGAATTGATGTCCACCATAGCA TTGAGCGTAGGGCAACCTGCATAAATGAAACGTACATCCTGGCTGCATGAAATTTGACAA CAGTGCCTAATGTGAGCCTCATAATTTAAT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RaxRi-F1LG6N/A16.93s6_3912141View
2Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 6N/A3912141s6_3912141View
3Sweet Cherry-RosBREED-3.8K-20206N/A5.32s6_3912141View
Sequence
>s6_3912141 ID=s6_3912141; Name=s6_3912141; organism=Prunus avium; type=genetic_marker; length=301bp
GATTATGCATCGCTTCACTGCAAAGGAATTCCCGAATGCTACTACGAAGC
ACAGCAAGGCCATCTGCAAACCGACTGTAAGGAGTCTTCCCAGCACCTTT
AAGCTGCAGTTCCCACCTTTCAGATTTAGAATTAAGAACCTCCCCAAGAG
RAATAGCCCGACCATCTCCCAACTGTCCAGCCCACATTCCGAATTGATGT
CCACCATAGCATTGAGCGTAGGGCAACCTGCATAAATGAAACGTACATCC
TGGCTGCATGAAATTTGACAACAGTGCCTAATGTGAGCCTCATAATTTAA
T
Alignments
Feature NameTypeLocationAnalysis
Pp06 chromosome Pp06:1297485..1297485. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr6 chromosome PAV_r1.0chr6:3637543..3637543. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)