s6_4570814, s6_4570814 (genetic_marker) Prunus avium

Marker Overview
Names6_4570814
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s6_4570814
TypeSNP
SNP AllelesT/G
5' Flanking SequenceAAAGAATAAGATGCTCACAAGTGTGTACACAAGTATCATCTGCCAAACAAAAATATGTAC GTACGTGAATATTCTTCAATCAAAATTACAATTTTCAGATGATAAGGTAACTCCAATATG CTGCTTAGCAACAATTGATTGGAGTAAGAT
3' Flanking SequenceATCAGTTTGATCCATATTAGGCACTATCTTCTTCGATCTCATGAAAACCCTACTACCAAA AATCAAGAAGCCAACTGAATATCCAGAAATTGCAGCAAGTAAAACACCAACGTTGAACGA CATGACTGCTAGCATTACCAAATAAGCCAA
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intragenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
s6_4570814s6_4570814Prunus aviummarker_locus


Sequence
>s6_4570814 ID=s6_4570814|Name=s6_4570814|organism=Prunus avium|type=genetic_marker|length=301bp
AAAGAATAAGATGCTCACAAGTGTGTACACAAGTATCATCTGCCAAACAA
AAATATGTACGTACGTGAATATTCTTCAATCAAAATTACAATTTTCAGAT
GATAAGGTAACTCCAATATGCTGCTTAGCAACAATTGATTGGAGTAAGAT
KATCAGTTTGATCCATATTAGGCACTATCTTCTTCGATCTCATGAAAACC
CTACTACCAAAAATCAAGAAGCCAACTGAATATCCAGAAATTGCAGCAAG
TAAAACACCAACGTTGAACGACATGACTGCTAGCATTACCAAATAAGCCA
A
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ra-F1RaLG6N/A11.75s6_4570814View
2Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 6N/A4570814s6_4570814View
3Sweet Cherry-RosBREED-3.8K-20206N/A0.95s6_4570814View
Alignments
Feature NameTypeLocationAnalysis
Pp06 chromosome Pp06:638774..638774. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)