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Marker Overview
| Name | s6_7248985 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | GTGATCACCACACTTGGGTTGTGAATTTTGATCAAACCCTTCATGCTAGAATACACTCCT
TGCAGCACTACCACCTCCGAGTTTGATACTCCCGAAAGAGCCCCCACAGCCAAATCGAAT
ATCTTAAACCTTCGCTCTTTGCAGACCAAC |
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| 3' Flanking Sequence | GAGGCCATTTTAGAGCAGTTGCTGCATCTTCACAGGCGCAGTAATTGCCTCCGGAGACAG
CAATATAGGCTTTCTTTCCAACAGTAGACCTGAATTTCTCAAGAAGGGGTGCAAGTGCCT
TAACTTCATCAACAGAATGAGCATAGAAGA |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s6_7248985 ID=s6_7248985; Name=s6_7248985; organism=Prunus avium; type=genetic_marker; length=301bp
GTGATCACCACACTTGGGTTGTGAATTTTGATCAAACCCTTCATGCTAGA
ATACACTCCTTGCAGCACTACCACCTCCGAGTTTGATACTCCCGAAAGAG
CCCCCACAGCCAAATCGAATATCTTAAACCTTCGCTCTTTGCAGACCAAC
YGAGGCCATTTTAGAGCAGTTGCTGCATCTTCACAGGCGCAGTAATTGCC
TCCGGAGACAGCAATATAGGCTTTCTTTCCAACAGTAGACCTGAATTTCT
CAAGAAGGGGTGCAAGTGCCTTAACTTCATCAACAGAATGAGCATAGAAG
A
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp06 |
chromosome |
Pp06:7263517..7263517. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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