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Marker Overview
| Name | s6_9993620 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s6_9993620 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | TGATCATGAAGAACTATATGTGGCTGCCAATTCTGCTCGGAATGCTAGTAGTATGCTTCT
TGACCGTTTAGTGCACAAACACACACGCACACACAAAGTTTAACAGTTCTCTACAAAAGC
AGCATATTTCTGTTACACATCCATGCATTT |
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| 3' Flanking Sequence | TCACTAAAGTTCTGCCTGGTTTCTGCAGAACTTGCAAGTTCTGCCCCATTTTGGAAGAAA
ATGGAATCAGTTTTTGGTTCTCTCAGCTCAGAGGACATATCCTACTTACAGCGGCAGGTA
TTAAATGGGTCCCCTGATGCATCTAAATTT |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s6_9993620 ID=s6_9993620; Name=s6_9993620; organism=Prunus avium; type=genetic_marker; length=301bp
TGATCATGAAGAACTATATGTGGCTGCCAATTCTGCTCGGAATGCTAGTA
GTATGCTTCTTGACCGTTTAGTGCACAAACACACACGCACACACAAAGTT
TAACAGTTCTCTACAAAAGCAGCATATTTCTGTTACACATCCATGCATTT
RTCACTAAAGTTCTGCCTGGTTTCTGCAGAACTTGCAAGTTCTGCCCCAT
TTTGGAAGAAAATGGAATCAGTTTTTGGTTCTCTCAGCTCAGAGGACATA
TCCTACTTACAGCGGCAGGTATTAAATGGGTCCCCTGATGCATCTAAATT
T
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