s7_14554867, s7_14554867 (genetic_marker) Prunus avium

Marker Overview
Names7_14554867
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s7_14554867
TypeSNP
SNP AllelesT/G
5' Flanking SequenceTCCGGCAGCTCATGAACGGAGGAGGAAGTAGGGCCCACTTTCCCTCCATCCCCTTACAAG CCGCCACGGAGCTCTTCCCGAGCCACCGAGTTCCGCCTCTCACGGCTCCACCAGCCCATC ATCATCAGCAGCACCATCACTATGAGCAGC
3' Flanking SequenceGATGATGATGGGCCGTCCTCAGCCGCATGATCATCATATCATCAACCCTCGTGGGCTCCA CCATCACGAGTTCCGCTCTCCAGATTCTGCTGCTGGAGGCGGTGCTGCTGCTAATAGTGC CACTGTTACTGCTTCTCTCAGTGGTGGTGG
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ri-F1RiLG7N/A22.68s7_14554867View
2Sweet Cherry-RaxRi-F1LG7N/A22.78s7_14554867View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 7N/A14554867s7_14554867View
Sequence
>s7_14554867 ID=s7_14554867; Name=s7_14554867; organism=Prunus avium; type=genetic_marker; length=301bp
TCCGGCAGCTCATGAACGGAGGAGGAAGTAGGGCCCACTTTCCCTCCATC
CCCTTACAAGCCGCCACGGAGCTCTTCCCGAGCCACCGAGTTCCGCCTCT
CACGGCTCCACCAGCCCATCATCATCAGCAGCACCATCACTATGAGCAGC
KGATGATGATGGGCCGTCCTCAGCCGCATGATCATCATATCATCAACCCT
CGTGGGCTCCACCATCACGAGTTCCGCTCTCCAGATTCTGCTGCTGGAGG
CGGTGCTGCTGCTAATAGTGCCACTGTTACTGCTTCTCTCAGTGGTGGTG
G
Alignments
Feature NameTypeLocationAnalysis
Pp07 chromosome Pp07:14153362..14153362. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr7 chromosome PAV_r1.0chr7:10284628..10284628. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)