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Marker Overview
| Name | s7_15625838 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | CCTGGAAAATACTCGTCCTGCTTCCTTACTTGCTCTGATGCTCGATTACCACCCAAACCC
TTACTTTCACTGCCACTCTCCTTCAGTCCATTGCCTATACCACGACGAGACGGCTGCACT
TGAGGGCGCATGTCAACAAGCAAACTTGAA |
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| 3' Flanking Sequence | GAGAACTATCCCTCTGCTCATTCAACAATTCATCATGGACAACTTGCCTCTGTTTCTGAT
TCAAACCGTCCTTTTGCTTTTGTGAAGGCCCTGATGAAGAAGGCAAAGCAGCCTGCAATG
AAGGAAAATCCTCGCCCCTCAAGAGCAGTG |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s7_15625838 ID=s7_15625838; Name=s7_15625838; organism=Prunus avium; type=genetic_marker; length=301bp
CCTGGAAAATACTCGTCCTGCTTCCTTACTTGCTCTGATGCTCGATTACC
ACCCAAACCCTTACTTTCACTGCCACTCTCCTTCAGTCCATTGCCTATAC
CACGACGAGACGGCTGCACTTGAGGGCGCATGTCAACAAGCAAACTTGAA
YGAGAACTATCCCTCTGCTCATTCAACAATTCATCATGGACAACTTGCCT
CTGTTTCTGATTCAAACCGTCCTTTTGCTTTTGTGAAGGCCCTGATGAAG
AAGGCAAAGCAGCCTGCAATGAAGGAAAATCCTCGCCCCTCAAGAGCAGT
G
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp07 |
chromosome |
Pp07:15224357..15224357. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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