s7_22367087, s7_22367087 (genetic_marker) Prunus avium

Marker Overview
Names7_22367087
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s7_22367087
TypeSNP
SNP AllelesT/G
5' Flanking SequenceCAACTGAACAATCAATAGCATAAGTGTGGTTTTTCTTCGGTGCTTCACTGCACTGTGTGT GCTTGAAGTGGTAGTGTTGGTGCTTGGAGTGGTCGTGTACCAGATTCAAGTGTTGTGTAC CAGACTCAAGTGTTGGTGCTTGCAGCACAA
3' Flanking SequenceTACGAACTCAGAAGGAAATGATGATACATGAAATAACTCCATTCTTACCGCATCAGTATC ATTCTGTGCAGGATGTCCCTTGCTTGCTGCTAGAGCTGCAGCAAGCTCTTCAGCCTATTC AATTAATAACACCAGCATCAGAACCTTGGC
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ri-F1RiLG7N/A59.4s7_22367087View
2Sweet Cherry-RaxRi-F1LG7N/A59.33s7_22367087View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 7N/A22367087s7_22367087View
Sequence
>s7_22367087 ID=s7_22367087; Name=s7_22367087; organism=Prunus avium; type=genetic_marker; length=301bp
CAACTGAACAATCAATAGCATAAGTGTGGTTTTTCTTCGGTGCTTCACTG
CACTGTGTGTGCTTGAAGTGGTAGTGTTGGTGCTTGGAGTGGTCGTGTAC
CAGATTCAAGTGTTGTGTACCAGACTCAAGTGTTGGTGCTTGCAGCACAA
KTACGAACTCAGAAGGAAATGATGATACATGAAATAACTCCATTCTTACC
GCATCAGTATCATTCTGTGCAGGATGTCCCTTGCTTGCTGCTAGAGCTGC
AGCAAGCTCTTCAGCCTATTCAATTAATAACACCAGCATCAGAACCTTGG
C
Alignments
Feature NameTypeLocationAnalysis
Pp07 chromosome Pp07:21965534..21965534. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)