s8_14266654, s8_14266654 (genetic_marker) Prunus avium

Marker Overview
Names8_14266654
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s8_14266654
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGTCTCTTGCTCTGTAACTACCGGCTGGGGCTGTGCGGGCTGTGCTGGATTGGTTTCCTGG GTCAACAATGTGGTGTCGGGAAATGGAAAATTGAGCTTTGCTCTGGGTCCACGGAACTCG ATCGCGGCCTTGTCGTAGGCCCGGGCAGCC
3' Flanking SequenceCCTCCGCCGTCGTGAATGTGCCGAGCCAGACCCGAGTCGCCCGTCTCGGGTCTCGAATTT CCGCAGCCCATTTACCCCAAGGCCTCTGCCTCACTCCCCTGTAGTTCTTCTTCACCCTCT TCTTGGGCCCCTTTTTGTTATTGTTTCCCT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-Ra-F1RaLG8N/A33.5s8_14266654View
2Sweet Cherry-RaxRi-F1LG8N/A33.37s8_14266654View
3Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 8N/A14266654s8_14266654View
Sequence
>s8_14266654 ID=s8_14266654; Name=s8_14266654; organism=Prunus avium; type=genetic_marker; length=301bp
GTCTCTTGCTCTGTAACTACCGGCTGGGGCTGTGCGGGCTGTGCTGGATT
GGTTTCCTGGGTCAACAATGTGGTGTCGGGAAATGGAAAATTGAGCTTTG
CTCTGGGTCCACGGAACTCGATCGCGGCCTTGTCGTAGGCCCGGGCAGCC
YCCTCCGCCGTCGTGAATGTGCCGAGCCAGACCCGAGTCGCCCGTCTCGG
GTCTCGAATTTCCGCAGCCCATTTACCCCAAGGCCTCTGCCTCACTCCCC
TGTAGTTCTTCTTCACCCTCTTCTTGGGCCCCTTTTTGTTATTGTTTCCC
T
Alignments
Feature NameTypeLocationAnalysis
Pp08 chromosome Pp08:15011120..15011120. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr8 chromosome PAV_r1.0chr8:11192932..11192932. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)