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Marker Overview
| Name | s8_14281700 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | GTCATATACAACTTGGTAATTTCTGGAGAATATCCCCTGACAAAATCAAATCTCCACCCA
CTGAACCCAATTTCAGTCTTTAGCCAATTCATCCAATCCGAGAGCTCTTTCTGGACTCTT
GTGTTTTTGTGGTCAATATCAGGAGCAGCA |
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| 3' Flanking Sequence | CGTAGCCGGCTCCAGTGTCAGGGTTCCCCTTGCCATCAGAATATTGTGTGTCGTCGCTGC
AAATAAGAGACGGGCCCCAATCAAGGCGATTGTCTGGGGTTCCTCCTTCAAAGATGCACC
ATATTCCTCTCTCATCTTGTTTCTCTGCAG |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s8_14281700 ID=s8_14281700; Name=s8_14281700; organism=Prunus avium; type=genetic_marker; length=301bp
GTCATATACAACTTGGTAATTTCTGGAGAATATCCCCTGACAAAATCAAA
TCTCCACCCACTGAACCCAATTTCAGTCTTTAGCCAATTCATCCAATCCG
AGAGCTCTTTCTGGACTCTTGTGTTTTTGTGGTCAATATCAGGAGCAGCA
YCGTAGCCGGCTCCAGTGTCAGGGTTCCCCTTGCCATCAGAATATTGTGT
GTCGTCGCTGCAAATAAGAGACGGGCCCCAATCAAGGCGATTGTCTGGGG
TTCCTCCTTCAAAGATGCACCATATTCCTCTCTCATCTTGTTTCTCTGCA
G
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp08 |
chromosome |
Pp08:15026165..15026165. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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