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Marker Overview
| Name | MDP0000172222_M |
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| dbSNP ID | . |
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| SNP Array ID | | 480K SNP array for apple: | AX-115182121 | | 20K SNP array for apple: | MDP0000172222_M |
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| Type | SNP |
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| SNP Alleles | T/C |
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| Probe 1 | MDP0000172222_M.probe: TCTGAGCTTCTGAACTATCCTGTCAGAGGTCTTGTTTTTGAGGGTGGAAA |
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| 5' Flanking Sequence | GCACTTCACATGGCGGCTGAAGCTGGGAGTCCTTACTTTCGATTGGGTTACAACAGCTTG
GGTGCATTTGCTACCATCAATCACCTTCACTTCCAGGCTTACTACTTGGCCGTGACCTTT
CCCATTGAGAAGGCTCCTACCAAGAAAATATCCACTCTGAATGCTGAGGTGAAGGTCTCT
GAGCTTCTGAACTATCCTGTCAGAGGTCTTGTTTTTGAGGGTGGAAA |
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| 3' Flanking Sequence | ACTCTGGAAGATTTGTCTTACACCGTCTCTGATGCCTGCATATGCCTTCAAGAAAACAAC
GTACCGTACAATGTCCTTATCTCTGATTGTGGAAAGCGAATCTTTCTCCTGCCACAGTGT
TATGCTGAGAAACAAGCTCTTGGAGAAGTGAGTGCAGAGGTTCTGGATACACAGGTGAAT
CCAGCGGTGTGGGAAATTAGTGGGCATATGGTCTTGAAGAGGAAAAAGGACTACGACGAG
GCTTCAGATGAAAATGCTTGGAAGCTCCTGGCAGAGGTTTCCCTTTCTGA |
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| Species | Malus x domestica |
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| Publication | [view all] |
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| Contact | Michela Troggio
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Publications
| Year | Publication |
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| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
Sequence
>MDP0000172222_M ID=MDP0000172222_M; Name=MDP0000172222_M; organism=Malus x domestica; type=genetic_marker; length=75bp
TATCCTGTCAGAGGTCTTGTTTTTGAGGGTGGAAA[C/T]ACTCTGGAAG
ATTTGTCTTACACCGTCTCTGATGC
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